Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1l03
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    33   0.039
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.64 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   1.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.5  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   5.9  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   7.9  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 525 NNYGLDDFGEDR-AGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHV 349
           N+Y  + + ++  +   +G  N ++  YGS  +NN+G     N    NG S N G     
Sbjct: 41  NSYSSNSYNDNNNSNSTYGSSN-NYGNYGS--SNNYGSYGASNTYGSNGSSNNYGNYGAT 97

Query: 348 DDDLDEGSAISPV 310
           + + D G +I+P+
Sbjct: 98  NSNGDAGYSITPI 110


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 346 INVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPE 456
           I+ N P+  A+ P+  E + EEPLP    LP    PE
Sbjct: 80  ISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPE 116


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -3

Query: 453 RKYG-SGENNNFGQRLFGNVLN--INGISGNLGRTVHVDDDLDEGSAISP 313
           R+YG  G N +    L   ++N  + G   +L RTV+V+ D+DE  A +P
Sbjct: 461 RRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHL-RTVYVEHDIDESEADTP 509


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/76 (23%), Positives = 43/76 (56%)
 Frame = +2

Query: 125  ALVDTYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGPAIVEGAPV 304
            +++++  PI+    +V+T  PI+   +++++  PI+    +V+T  PI+   A+    P+
Sbjct: 2728 SVLNSSTPIT-SSTVVNTSTPIT-SSSVLNSSTPIT-SSTVVNTSTPITSSTALNTSTPI 2784

Query: 305  TVTGLMALPSSRSSST 352
            T + ++   +  +SST
Sbjct: 2785 TSSSVLNSSTPITSST 2800


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 352 VNRPSEIAADPVDVEDIAEEPLPEVVILPTPV 447
           ++ P++ A+  V  E   E+P+P  V+ P PV
Sbjct: 200 LSSPTQGASSNVTPESPPEKPIPSFVLSPPPV 231


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 531 GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNING 382
           GT  Y  + FG+ + G +      DF     G +N + ++  GNV  ++G
Sbjct: 762 GTMPYNNNKFGQPQQGYMSQSGFNDFPPIFGGHSNVYNRQQPGNVSGMSG 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,787
Number of Sequences: 5004
Number of extensions: 46857
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)