Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1k21
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   7.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 360 EFWTAVIGPACVGAIVTTISTNYVKGELKHAMNISKPKY 476
           + WT V      GA++     NY      H+ NI K KY
Sbjct: 305 DIWTGVCLTFVFGALLEFALVNYASRSDMHSDNIEK-KY 342


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 360 EFWTAVIGPACVGAIVTTISTNYVKGELKHAMNISKPKY 476
           + WT V      GA++     NY      H+ NI K KY
Sbjct: 305 DIWTGVCLTFVFGALLEFALVNYASRSDMHSDNIEK-KY 342


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 56  FHNYKAVISYYRFYK*N 106
           F  YK ++ YY  YK N
Sbjct: 418 FSIYKTILDYYHKYKEN 434


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 56  FHNYKAVISYYRFYK*N 106
           F  YK ++ YY  YK N
Sbjct: 418 FSIYKTILDYYHKYKEN 434


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 56  FHNYKAVISYYRFYK*N 106
           F  YK ++ YY  YK N
Sbjct: 44  FSIYKTILDYYHKYKEN 60


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 108 KMLKNPNYVYGSRDITVPLHLNFGQF 185
           K L   NY+     I VP+ + +G F
Sbjct: 113 KKLYYKNYIINIEQIPVPVPVYYGNF 138


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 108 KMLKNPNYVYGSRDITVPLHLNFGQF 185
           K L   NY+     I VP+ + +G F
Sbjct: 338 KKLYYKNYIINIEQIPVPVPVYYGNF 363


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 565 ASPKIIVFSMNPNDFNVRTCLSCIFGDIITYFGF 464
           A  + I+ S+     N    LS +  D++ YFG+
Sbjct: 300 APEETIISSVFTTRHNATCYLSHVDPDVVQYFGY 333


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 565 ASPKIIVFSMNPNDFNVRTCLSCIFGDIITYFGF 464
           A  + I+ S+     N    LS +  D++ YFG+
Sbjct: 6   APEETIISSVFTTRHNATCYLSHVDPDVVQYFGY 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,847
Number of Sequences: 438
Number of extensions: 4563
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)