Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1k16
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    38   8e-05
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 38.3 bits (85), Expect = 8e-05
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
 Frame = +3

Query: 345 VVKEIKDKGGVAV---ADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQ 515
           +V+E+K K G  V    D ++  +  K+I+    N G IDILINNA I  D +       
Sbjct: 47  LVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVL 106

Query: 516 DWDLIQAVHLKGAFKTTHAAWETFRKQ--KYGRIVMTSSNAGLF---GNFGQANYSAAKL 680
           DW  I  ++L G         +  +K+    G IV  +  +GL     N  +  Y A+K 
Sbjct: 107 DWKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKC 166

Query: 681 GLVGLANTL 707
            L  L + L
Sbjct: 167 ALTTLTDCL 175


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 194 TQLIHPRRCTETK 156
           T L+HP RCT+ K
Sbjct: 13  TFLLHPSRCTQGK 25


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 194 TQLIHPRRCTETK 156
           T L+HP RCT+ K
Sbjct: 13  TFLLHPSRCTQGK 25


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 340 SAALDFPAPSLALPRSLTTT 281
           S  L  PA S +LP ++TTT
Sbjct: 91  SRPLHPPASSTSLPATITTT 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,242
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)