Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1k13
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -2

Query: 519 IMLSQSFKVEFVAEAALLATSQNVSPFLSPPLKYAFVIVGTHIV*PVDVM*AHIR 355
           I+LSQ+     ++E  ++ ++    P L   L +  ++VG  +V  + ++  H R
Sbjct: 273 ILLSQTMFFLLISE--IIPSTSLALPLLGKYLLFTMILVGLSVVITIVILNVHYR 325


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 147 SLLSRNFGLSLRKAIAIVPITPGILMICISIR 52
           S +  N+   LR    ++   PG  +ICI+I+
Sbjct: 647 SSIETNYECGLRFEDPMISFQPGDTIICINIK 678


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +1

Query: 562 VDRILSSPVLRRRTFREKVDHAPSVCRSSILRGSTPVRQDTNAQYSTVL 708
           +D IL     R R   E     P+V R +I   S     D   +YS  L
Sbjct: 36  LDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 185 YRWNTGRKPYTYPVSSVYLDEEPVLMENSSFFRKMWDQTAP 307
           YR +TG KPY       Y  +   + EN S  R++  +  P
Sbjct: 111 YRTHTGEKPY----QCEYCSKSFSVKENLSVHRRIHTKERP 147


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 232 TTDWISIWFSASI 194
           TTDW  +W S  +
Sbjct: 115 TTDWCDVWRSLDV 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,360
Number of Sequences: 438
Number of extensions: 4735
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)