Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1k11
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.56 
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    28   0.98 
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   3.0  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   5.2  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   6.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.9  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    25   9.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.1  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   9.1  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 82  VGMAVAFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVPAAVVLGAI 252
           +GMAVA    +  AQ+  G    +N F G     F++S  ++KG   +    V+G+I
Sbjct: 455 IGMAVA----SISAQSSMGMGAFINAFFGSVIEVFLYSVALRKGNAGLVEGSVIGSI 507


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 332 DLIVLVDCAASGKKIQPSSMPVFFTTAIAPSTTAAGTAIIPFFIQALNTKPD 177
           DL+  ++C     KI P S P +FT   A        A +  F + L+  P+
Sbjct: 536 DLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPE 587


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 118 VAQNIR--GKNDKLNYFLGGATSG 183
           VA NI   G N K  +FLGGA++G
Sbjct: 151 VASNIEKLGANPKRGFFLGGASAG 174


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 304 AAQSTKTIKSVKHDWTLLKDIEELKGWTDGSKQ 402
           AA    T+K    +W  L    ELK ++DG+++
Sbjct: 8   AALLVGTLKHAHKEWEALGKYAELKTYSDGTRE 40


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 72 YNIAHSTDCIDKTFWMREHKHI 7
          ++I + TD +D  FW++EH H+
Sbjct: 14 HDIGNRTDELD--FWLKEHLHV 33


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 269  VFFTTAIAPSTTAAGTAIIPFFIQALNTKP 180
            VFF+  + P+  AAG  I  FFI +    P
Sbjct: 1622 VFFSDVLIPALLAAGAIIPYFFINSQPGNP 1651


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 386 VHPFNSSISLRRVQSCLTDLIVLVDCAASGKKIQPSSMPV 267
           ++P + S+  R++ +CL+D+   V     G    P S+PV
Sbjct: 62  IYPLHPSLIQRQIDACLSDIQCRV--VKIGMLPDPKSIPV 99


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 284 PSSMPVFFTTAIAPSTTAAGTAIIPFFIQALNTKPDVAPP 165
           PS+     TT + P+T+   T  +P    +LNT    APP
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPP-TTSLNTTTTTAPP 111


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 7   DVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTF 108
           DV + S+    +NT+  +GYIVG   G  +  TF
Sbjct: 131 DVHITSNQYNNLNTLFYVGYIVGQFPGHYIMQTF 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,508
Number of Sequences: 5004
Number of extensions: 47778
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)