Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1k09
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          191   5e-49
12_01_0323 - 2459854-2460306                                          190   1e-48
11_01_0317 - 2365493-2365786,2365825-2365953                          152   2e-37
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898...    29   4.9  
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165...    28   8.5  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   8.5  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  191 bits (465), Expect = 5e-49
 Identities = 93/137 (67%), Positives = 116/137 (84%)
 Frame = +2

Query: 233 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 412
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 413 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 592
            YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILD
Sbjct: 61  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119

Query: 593 RRAKGRLAALGKDKGKY 643
           R+A+GR  A  K KGK+
Sbjct: 120 RKARGR--AADKAKGKF 134


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  190 bits (462), Expect = 1e-48
 Identities = 93/137 (67%), Positives = 115/137 (83%)
 Frame = +2

Query: 233 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 412
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 413 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 592
            YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILD
Sbjct: 61  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119

Query: 593 RRAKGRLAALGKDKGKY 643
           R+A GR  A  K KGK+
Sbjct: 120 RKASGR--AADKAKGKF 134


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score =  152 bits (369), Expect = 2e-37
 Identities = 82/137 (59%), Positives = 102/137 (74%)
 Frame = +2

Query: 233 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 412
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV             VRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV-------------VRG 47

Query: 413 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 592
            YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILD
Sbjct: 48  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 106

Query: 593 RRAKGRLAALGKDKGKY 643
           R+A GR  A  K KGK+
Sbjct: 107 RKASGR--AADKAKGKF 121


>06_03_1161 -
           28089177-28089359,28089473-28089700,28089776-28089814,
           28090681-28090737,28090924-28091046
          Length = 209

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = +2

Query: 236 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 397
           +F  + ++S++    ++F     I+   +   L +  R+K    S+P+      R  D V
Sbjct: 42  EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101

Query: 398 QVVRGHYKGQQVGKVMQVYRKKFVVYIE 481
           QV+ G  KG +VG+V ++++    V ++
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHNSTVIVK 128


>12_02_0996 -
           25115643-25115708,25115869-25116107,25116484-25116577,
           25116726-25116864,25116960-25117081,25117261-25117491,
           25117583-25117644,25118335-25118461,25118890-25119183,
           25119266-25119622
          Length = 576

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +1

Query: 472 IH*EDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRG 651
           +H   S+ +G      C H+  K C C +  E + Q+  R  +  Q     ++   I R 
Sbjct: 463 LHENLSQVEGHDIALCCNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRS 522

Query: 652 NCHSH 666
             HS+
Sbjct: 523 AVHSN 527


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
 Frame = +2

Query: 332  LSKELRQKFNVKS-MPIRKDDEVQVVRGHYKGQQVGKVMQ--VYRKKFVVYIERIQREKA 502
            L+ E+ ++ N KS +P  K+D   V  GH + + V +VMQ  +     +  IE +Q E++
Sbjct: 3846 LNDEVEEEKNDKSNIPKEKEDRFTV--GHTE-ESVHEVMQSVLVSDADLRSIETLQCEES 3902

Query: 503  NGATAYVGIHPSKCVIVK 556
            NG  +      S C+IV+
Sbjct: 3903 NGVKSTGDYLESGCIIVE 3920


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,044
Number of Sequences: 37544
Number of extensions: 399131
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)