Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1k01
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce... 44 1e-05
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 2.2
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 2.9
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 5.1
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 26 5.1
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 25 6.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 6.8
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 25 6.8
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar... 25 6.8
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 9.0
>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/96 (20%), Positives = 51/96 (53%)
Frame = +3
Query: 144 VDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPASN 323
++S+ + A+EF + +Y +D +R+ ++ Y + L++WNG + + +++LP S
Sbjct: 1 MESSVKYAQEFVQRYYSSLDTNRNGIAEFYRENSLILWNGKPMQVTE-FTSMIVNLPYSK 59
Query: 324 HTLKSLDAQPISDVLVANKLTYLIQACGDVTYQNEE 431
++ D+Q + + N + +I G + + ++
Sbjct: 60 TKVEDFDSQQV----MGNDMNIIIVVSGTIRFDGKK 91
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 181 LVNSSAVSQALSTFFTATSDIFIFFVLNLKQNLC*YFINDIL*LVIIF 38
L+ SS V + DI ++F+ +LK+N +FI + +VI F
Sbjct: 507 LMGSSLVEFPMRIVVVTMYDIIVYFLSDLKRNARSFFIFYLFTIVITF 554
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 521 RNLESETIRGYLPFPINC-HYEKSLLKWFLCF 429
R L+S+T YL +P N +K+L WFLC+
Sbjct: 267 RRLKSKTEDTYL-YPANSPEVKKALENWFLCY 297
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 276 GNDKIQKFLMDLPASNHTLKSLDAQPI 356
G + K+L DL S H SLDA P+
Sbjct: 182 GASLLDKYLCDLRTSYHKHNSLDALPL 208
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 143 IFYCYVRHIYIFCSKFETKSLLVFY 69
+ Y +RH+Y+ + F +KSL F+
Sbjct: 376 VHYFLLRHVYVPLNSFMSKSLSTFF 400
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 449 LKWFLCFFVLISNISTSLDEVR-QFICNQDIRYWLSI*TFQRMVTC 315
++W+ C F S++ +D++R Q I N I Y L++ +R + C
Sbjct: 207 IQWYTCMFGKKSSVPAVVDKLREQNISNYGI-YELALGKTKRWIIC 251
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 246 LLVWNGNGISGNDKIQKFLMDLPASNHTLKSLDAQPISDVLVANKLTYLIQA 401
L+ + NG + + K + DLP N + ++L + I L+A+ L L+ A
Sbjct: 632 LIAFANNGFAFHPKSSSWTYDLPVINRSFEALSSYDIPP-LLASLLDALLPA 682
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 526 EINFYFIIKLNVPIAKQKFYLRNTLK 603
E N+Y KLN+ +QK LRN LK
Sbjct: 350 EKNYYEWKKLNIKRCQQKQILRNILK 375
>SPAC23G3.07c |snf30||SWI/SNF complex subunit
Snf30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 268 PLPFQTSNPVSKYNFEVRWRLLSTCL*NTLVNSSAVSQALSTFFTATSDIFIFFVLNLKQ 89
P+ + +N + + N + W+ L T NS+ +ALST ++F ++ LK
Sbjct: 22 PMEVEKANKLLEINRLILWKCLELQHIKTAQNSTLEQRALST------ELFNSYIQRLKA 75
Query: 88 NL 83
NL
Sbjct: 76 NL 77
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 108 KNINMSD-VAVKNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLL 251
K + + D VA+K++D C+T +E + S H YLD+ L+
Sbjct: 332 KQLGIFDSVAIKSIDLQCQTRKELILNEITVMRESIHPNIVTYLDSFLV 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,443
Number of Sequences: 5004
Number of extensions: 55613
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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