Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1k01
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234...    29   4.0  
01_06_1124 - 34679205-34680926,34681438-34682811                       28   5.3  
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722           28   7.0  
05_07_0213 + 28443724-28443775,28443901-28444007,28444757-284456...    27   9.2  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    27   9.2  

>10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,
            2343027-2343236,2343436-2343654,2344038-2345000,
            2345279-2345374,2345482-2345580,2345953-2346142,
            2346594-2346823
          Length = 1358

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 261  GNGISGNDKIQKFLMDLPASNHTLKSL 341
            G G  G+D++  F MD+PA+   +K L
Sbjct: 1314 GGGTGGSDQVTSFQMDVPATMPAVKEL 1340


>01_06_1124 - 34679205-34680926,34681438-34682811
          Length = 1031

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 354 ISDVLVANKLTYLIQACGDVTY 419
           +SD+ V+N L +L  ACG++ Y
Sbjct: 584 LSDIFVSNSLIHLYAACGNLCY 605


>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
          Length = 1155

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 294 KFLMDLPASNHTLKSLDAQPISDVLVANKLTYLIQACGDVTYQN 425
           K   +LP+    LK+LD   +SD  ++ K+   I  C  + Y N
Sbjct: 645 KLTGNLPSEVGNLKNLDELDLSDNTISGKIPTTIGECQSLQYLN 688


>05_07_0213 +
           28443724-28443775,28443901-28444007,28444757-28445644,
           28445760-28445762,28446006-28446398
          Length = 480

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 349 NQYLMSWLQIN*RTSSKLVEMLLIKTKKQRNHFSKLFS 462
           ++YL SWLQ+  +   + + ++L KTK++ N    L S
Sbjct: 138 SRYLDSWLQVVVKPGIEELTLVLCKTKREYNFPCSLLS 175


>04_04_1189 +
           31586991-31587291,31587358-31587397,31587449-31587534,
           31587535-31588097,31588250-31589913,31589956-31590066,
           31590152-31591181,31591234-31591406,31591535-31591814,
           31592275-31592331
          Length = 1434

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 192 KQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPASNHTLKSLDAQPISD 362
           K   +   L  K YL    L WNG  +S      K +++    +H LK+L     SD
Sbjct: 758 KDEASGARLIDKEYLKKLSLSWNGGSVSLEPDRSKDVLEGLRPHHNLKTLSITGYSD 814


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,515
Number of Sequences: 37544
Number of extensions: 303932
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)