Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1k01
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF156960-1|AAD54945.1| 137|Caenorhabditis elegans NTF2-related ... 84 9e-17
AC024852-2|AAK66028.1| 137|Caenorhabditis elegans Ntf2-related ... 84 9e-17
AC024852-3|ABQ13048.1| 131|Caenorhabditis elegans Ntf2-related ... 73 2e-13
AC006684-6|AAF39964.1| 361|Caenorhabditis elegans Hypothetical ... 31 0.89
U28929-4|AAA68347.3| 338|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 27 8.3
>AF156960-1|AAD54945.1| 137|Caenorhabditis elegans NTF2-related
export protein NXT1 protein.
Length = 137
Score = 83.8 bits (198), Expect = 9e-17
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Frame = +3
Query: 138 KNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPA 317
K + C +++F V+Y +D R LY VWNGN I+G D I +F+ LP+
Sbjct: 11 KEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALPS 70
Query: 318 SNHTLKSLDAQPISDVLVANKL-TYLIQACGDVTYQNEETKKPFQQTFLIVAVDGKWKIA 494
+ H ++SLDAQ + + + + L+ G VT ++K+ F QT L+ DGK+K+
Sbjct: 71 TQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDG-DSKRAFTQTLLLGVEDGKYKVK 129
Query: 495 SDCFR 509
SD FR
Sbjct: 130 SDRFR 134
>AC024852-2|AAK66028.1| 137|Caenorhabditis elegans Ntf2-related
export protein protein1, isoform a protein.
Length = 137
Score = 83.8 bits (198), Expect = 9e-17
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Frame = +3
Query: 138 KNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPA 317
K + C +++F V+Y +D R LY VWNGN I+G D I +F+ LP+
Sbjct: 11 KEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALPS 70
Query: 318 SNHTLKSLDAQPISDVLVANKL-TYLIQACGDVTYQNEETKKPFQQTFLIVAVDGKWKIA 494
+ H ++SLDAQ + + + + L+ G VT ++K+ F QT L+ DGK+K+
Sbjct: 71 TQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDG-DSKRAFTQTLLLGVEDGKYKVK 129
Query: 495 SDCFR 509
SD FR
Sbjct: 130 SDRFR 134
>AC024852-3|ABQ13048.1| 131|Caenorhabditis elegans Ntf2-related
export protein protein1, isoform b protein.
Length = 131
Score = 72.9 bits (171), Expect = 2e-13
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 138 KNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPA 317
K + C +++F V+Y +D R LY VWNGN I+G F+ LP+
Sbjct: 11 KEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPING------FMKALPS 64
Query: 318 SNHTLKSLDAQPISDVLVANKL-TYLIQACGDVTYQNEETKKPFQQTFLIVAVDGKWKIA 494
+ H ++SLDAQ + + + + L+ G VT ++K+ F QT L+ DGK+K+
Sbjct: 65 TQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDG-DSKRAFTQTLLLGVEDGKYKVK 123
Query: 495 SDCFR 509
SD FR
Sbjct: 124 SDRFR 128
>AC006684-6|AAF39964.1| 361|Caenorhabditis elegans Hypothetical
protein T02H6.5 protein.
Length = 361
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -2
Query: 343 SKLFSVWLLAGKSIKNFCILSLPLIPLPFQTSNPVSKYNFEVRWRLLST 197
SKLF + K+ K F +L LPL+PL N +++ +FE WRL T
Sbjct: 4 SKLFFAYF--HKNEKPFKMLCLPLLPL----KNVINQMSFESVWRLSKT 46
>U28929-4|AAA68347.3| 338|Caenorhabditis elegans Hypothetical
protein F09C12.6 protein.
Length = 338
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = -1
Query: 296 FLYFVIATDTIAVPNK*SSIQIQF*G*MAAVVYLFVKHSSKFFSCLTSTINIFY-----C 132
F+ FV+ +++PN S + + F V F+ S +F+C+ S INIF
Sbjct: 242 FISFVL----VSIPNAISILSVHF-----EEVVSFISKPSTYFTCVNSGINIFVYLSLNA 292
Query: 131 YVRH--IYIFCSK 99
RH Y+FC+K
Sbjct: 293 EFRHQFKYLFCNK 305
>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical protein
C35A5.8 protein.
Length = 1078
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 87 FCFKFRTKNINMSDVAVKNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLD 239
FC R+ + +S V + SAC + + Y+++ S T+K+ +D
Sbjct: 901 FCALLRSIHSGLSSVDAIVITSACSSLDTILNYLYRRLTRSTPPTNKVGMD 951
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 138 KNVDSACETAEEFTRVFYKQVDNSRHLTS 224
++++ C +E R+ YK+VDN L+S
Sbjct: 432 QSIEDFCLKLDEIARIAYKRVDNPAELSS 460
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,966
Number of Sequences: 27780
Number of extensions: 303146
Number of successful extensions: 869
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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