Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1j21
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 54 2e-08
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 29 0.49
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.49
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 27 3.5
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 27 3.5
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 26 4.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 6.0
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 25 8.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 8.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.0
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 54.0 bits (124), Expect = 2e-08
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Frame = +3
Query: 63 LVFRSIGYKSIKA----DEDVPFSN--GLVLNERGCVIDEANELGKLYVAGWLGTGPVGV 224
L RSIGYKS+ D VPF + G+V N G V +Y +GW+ GP+GV
Sbjct: 330 LFIRSIGYKSMPLPGMKDVGVPFDDAKGIVKNVNGFVRPG------IYTSGWVKHGPIGV 383
Query: 225 ILHTMGNAFQVAKTICDDLKNKADYSKS 308
I TM +AF A TI D K+K ++ K+
Sbjct: 384 IATTMMDAFATADTITKDWKSKKEFLKN 411
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 114 PFSNGLVLNERGCVIDEANELGKLYVAG 197
P S G ++E CV++ ++ GK+YVAG
Sbjct: 361 PNSQGAQISEEYCVLNAPSKQGKVYVAG 388
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.49
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = -1
Query: 193 ATYSFPSSLASSITQPLSFKTSPLLNGTSSSALILLYPILLKTKPQFTTSISSVGIHF*L 14
A+ S PSS++SSI+ + +SP ++SS +I I+ + ++SIS++ I L
Sbjct: 606 ASTSSPSSISSSISSSSTILSSP--TPSTSSLMISSSSIISGSSSILSSSISTIPISSSL 663
Query: 13 SQFS 2
S +S
Sbjct: 664 STYS 667
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 593 GLWMYIVTLTLYIVFVTYFY 652
G W ++ TL L +F+TYFY
Sbjct: 114 GFWCFVCTLAL--IFLTYFY 131
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -1
Query: 226 ITPTGPVPSHPATYSFPSSLASSITQPLSFKTSPLLNGTSSSALILL 86
+TP VPSH TY+ L + + +S LL SA L
Sbjct: 571 LTPKVVVPSHKETYTDEKKLIDELDRVNPLNSSQLLRSKRKSAATAL 617
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 223 TPTGPVPSHPATYSFPSSLASSITQPLSFK---TSPLLNGTSSSALILLYPILLKTK 62
TP P S PA FP L S P++ TS N +S+ ++ +PI+ T+
Sbjct: 393 TPVFPPESAPAASIFPPRLTSKQPIPMASPAKLTSDTSNKSSAYVVVDHHPIISSTQ 449
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 184 SFPSSLASSITQPLSFKTSPLLNGTSSSALILLYPILLKT-KPQFTTSISSV 32
SFPSSL S +TQ SF T + +S+ L PI P ++ SS+
Sbjct: 334 SFPSSLLSLLTQ--SFSTVRSTSSSSTDQLTSASPISSSVISPSVSSPTSSI 383
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 211 PVPSH----PATYSFPSSLASSITQPLSFKTSPLLNGTSSSA 98
PV +H P SFP++ A + L+ + P+ +GTS A
Sbjct: 22 PVTNHERILPKQPSFPTAPAQNEIATLTIRNGPIFHGTSFGA 63
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -1
Query: 184 SFPSSLASSITQPLSFKTSPLLNGTSSSALILLYPILLKTKPQ---FTTSIS 38
S PS++A+S QP + + SSAL YP L T+ + FT +I+
Sbjct: 300 STPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPSSLSTEVEVEYFTKTIT 351
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 175 SSLASSITQPLSFKTSPLLNGTSSSALILLYPILLKTKPQFTTSIS 38
SS + ++ P S + LNGTSS + + P +T P ++SI+
Sbjct: 612 SSTSEIVSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSSIT 657
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,390
Number of Sequences: 5004
Number of extensions: 47581
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -