Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1j06
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...   230   2e-61
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   2.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    27   3.3  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   4.3  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    26   5.7  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   5.7  
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    26   5.7  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    26   5.7  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   7.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   7.5  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   9.9  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.9  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   9.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.9  

>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score =  230 bits (562), Expect = 2e-61
 Identities = 109/179 (60%), Positives = 138/179 (77%)
 Frame = +2

Query: 134 ETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIV 313
           +T+ +D+ W  KI  FT DD+    LEES FATLFPKYRE+YL+E WP V + L +  I 
Sbjct: 27  DTDDIDH-W--KIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGIT 83

Query: 314 AELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINS 493
             LDL+EGS+TVKTTRKT+DPY I+ ARD +KLL+RSVPF QA +++ D + CDIIKI +
Sbjct: 84  CVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACDIIKIGN 143

Query: 494 FVRKKETFLKRRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVED 670
            +R KE F+KRRQRLIG  G TLK++ELLT+CY+LVQG TV+ +G YKGL +VRRIVED
Sbjct: 144 ILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVRRIVED 202


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 576 NSMDFNVTP*GPINLCRLFKKVSFLRTNELILIMSHPISS 457
           N+  F+  P  PI+ CR+ ++  F   N L+     P+S+
Sbjct: 96  NNYQFSTAPLNPIDACRVGERKVFTTGNVLLSADRQPLST 135


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 86  SLLATLNLIKTNMEVEETNSVDNAWAMKIP 175
           S L TL+ I    +  ET   ++AW  KIP
Sbjct: 221 SNLVTLSKIMRQADASETGGQNSAWKQKIP 250


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 215 ESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPY 379
           ES+F+ L   +R+ Y+K        I ++ H V   +L+      +  RK ++ Y
Sbjct: 138 ESRFSRLEEAFRDFYIKNLEKTEDLIRTDSHFVLNKELLSFRNDYEHRRKHYEKY 192


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 596 KHSILLIIQWILM*HPEVLSTSAVSSKRFLFCEQ 495
           KH +LL  QW     P+V  T  +S   F + E+
Sbjct: 156 KHPLLLKYQWYWRVEPDVAFTCDISYDPFYYMEE 189


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
 Frame = +2

Query: 77  KIISLLATLNLIKTNMEVEETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQ 256
           K+  LL  L + K  +   + + +   W +  P F+P +  +  +  +      P + + 
Sbjct: 420 KLRLLLHELLVKKKALPELDKDLLKFVWVVDFPLFSPTEEKNQSITSTHHPFTAPHWDDV 479

Query: 257 YLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKARDFMKL-LSRSVPF 433
           +L E  PL  + L    +V  ++L  GS+ +         +++   +D +KL  +R   F
Sbjct: 480 HLLEKKPLSVRGLHYDIVVNGIELGGGSIRIH--NPDIQRFVL---KDVLKLPENRYATF 534

Query: 434 EQASRVLDDEIGC 472
           E   RVL    GC
Sbjct: 535 EHLIRVLSS--GC 545


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 230 TLFPKYREQYLKECWPLVQKILSE 301
           T+ P Y  QYLK+   L+QK LSE
Sbjct: 3   TIVP-YSHQYLKDICQLIQKDLSE 25


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 227 ATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEG 337
           A + P+Y+EQY +E    + K+++E  I  + D+ +G
Sbjct: 290 ANILPQYQEQYFEE----MPKLIAEGKIKYKCDVYDG 322


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 540 INLCRLFKKVSFLRTNELILIMSHPISSSSTREACSNGTLLDNSFMKSR 394
           IN+ R F +   +     I   S P+S+S+  + CS GT+L  S + +R
Sbjct: 8   INMQRSFSRQFHISVRNSIQ-SSKPLSNSTPLKGCSVGTILIRSPILTR 55


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +2

Query: 77  KIISLLATLNLIKTNMEVEE-TNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYRE 253
           K++SL+ + N I     + E  N     W+  +  F  +DN    L   K       +  
Sbjct: 356 KLVSLIESFNNITMESVLTECLNDWSTTWS-SVSTFASEDNKLEELNRLKSLLSISSHLP 414

Query: 254 QYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYI 382
           + L+   PL+  ILS+  +V +   I+ +     T  T + YI
Sbjct: 415 KTLQLMEPLLDGILSQ--LVPKSSGIDSNSQKLLTSSTSNEYI 455


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 155 AWAMKIPKFTPDDNPHGLL 211
           AW    P  TPD +P GLL
Sbjct: 553 AWGFMCPVHTPDGSPCGLL 571


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 498 TNELILIMSHPISSSSTREACSNGTLLD 415
           T EL  ++S+P+  SS  E  SN  +LD
Sbjct: 141 TEELANMLSNPMVQSSINEMFSNPQMLD 168


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 653 LLALNLYRGLLQILYYLGLKHSILLIIQ 570
           LLA+    GL   +Y +GLK ++L  ++
Sbjct: 268 LLAIKYIGGLYNAVYLMGLKKNLLAFVE 295


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 486 ILIMSHPISSSSTREACSNGTLLDNSFMKSRALIIMY 376
           +L+M H IS+ + R A S    L  S   S++L ++Y
Sbjct: 331 LLLMQHKISNGNFRGALSIYQKLRTSLEASQSLSVLY 367


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 536 LIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVED 670
           LIGP+G TLK +E  +   + ++G      G  +    VR  +E+
Sbjct: 206 LIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRSDPSVRGNMEE 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,523
Number of Sequences: 5004
Number of extensions: 46084
Number of successful extensions: 145
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)