Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1j06
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical ...   242   2e-64
AF047659-9|AAC04421.1|  254|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical p...    33   0.24 
AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna bin...    31   0.75 
AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna bin...    31   0.75 
AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna bin...    31   0.75 
AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical...    31   0.75 
Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical pr...    31   0.99 
U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.        31   0.99 
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    29   3.0  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    29   3.0  
U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical p...    28   6.9  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    27   9.2  

>AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical
           protein C05C8.2 protein.
          Length = 370

 Score =  242 bits (592), Expect = 2e-64
 Identities = 112/174 (64%), Positives = 141/174 (81%)
 Frame = +2

Query: 149 DNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDL 328
           D  W   I  F+ +DNP+GLL+ES F++LFPKYRE+Y+KE WPL++K L EH + A+LDL
Sbjct: 41  DAEW-WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDL 99

Query: 329 IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKK 508
           +EG++ V+TTRKTWDPYII+KAR+ +KLLSRSVP+EQA RVL+DEI C+IIKI+S VR K
Sbjct: 100 LEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNK 159

Query: 509 ETFLKRRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVED 670
           E F+KRR RLIG  G TLK++ELLT+CYV VQG TV AVGP  GL Q+ +IV D
Sbjct: 160 ERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTD 213


>AF047659-9|AAC04421.1|  254|Caenorhabditis elegans Hypothetical
           protein K07H8.9 protein.
          Length = 254

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 533 RLIGPQGVTLKSIELLTECYVLVQGN 610
           R+IGP+G T K +E  T C ++++GN
Sbjct: 140 RIIGPRGTTAKQLEKDTGCRIMIRGN 165


>Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical
           protein Y57G11C.36 protein.
          Length = 380

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 533 RLIGPQGVTLKSIELLTECYVLVQGNT 613
           RL+GP+G T K +E+ T C + + G T
Sbjct: 131 RLLGPRGTTAKQLEVTTGCRITILGRT 157


>AF000197-8|AAB52897.2|  328|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform a protein.
          Length = 328

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 533 RLIGPQGVTLKSIELLTECYVLVQG 607
           R++GP+G+T K +E  T C ++V+G
Sbjct: 107 RILGPRGMTAKQLEQETGCKIMVRG 131


>AF000197-7|AAU20839.1|  445|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform c protein.
          Length = 445

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 533 RLIGPQGVTLKSIELLTECYVLVQG 607
           R++GP+G+T K +E  T C ++V+G
Sbjct: 149 RILGPRGMTAKQLEQETGCKIMVRG 173


>AF000197-6|AAP68907.1|  403|Caenorhabditis elegans Star (rna
           binding protein) familyprotein 2, isoform b protein.
          Length = 403

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 533 RLIGPQGVTLKSIELLTECYVLVQG 607
           R++GP+G+T K +E  T C ++V+G
Sbjct: 107 RILGPRGMTAKQLEQETGCKIMVRG 131


>AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32a protein.
          Length = 384

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 533 RLIGPQGVTLKSIELLTECYVLVQG 607
           R++GP+G+T+K +E  T C + V+G
Sbjct: 90  RILGPRGMTVKQLEKETGCRIFVRG 114


>Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical
           protein T23G11.3 protein.
          Length = 463

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 533 RLIGPQGVTLKSIELLTECYVLVQG 607
           R++GP+G+T K +E  T C ++V+G
Sbjct: 224 RILGPRGMTAKQLEQDTGCKIMVRG 248


>U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.
          Length = 463

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 533 RLIGPQGVTLKSIELLTECYVLVQG 607
           R++GP+G+T K +E  T C ++V+G
Sbjct: 224 RILGPRGMTAKQLEQDTGCKIMVRG 248


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 536 LIGPQGVTLKSIELLTECYVLVQG 607
           LIGP+G TLKS+E  T   ++++G
Sbjct: 323 LIGPRGNTLKSLEAETGAKIIIRG 346


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 536 LIGPQGVTLKSIELLTECYVLVQG 607
           LIGP+G TLKS+E  T   ++++G
Sbjct: 323 LIGPRGNTLKSLEAETGAKIIIRG 346


>U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical
           protein B0280.17 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 533 RLIGPQGVTLKSIELLTECYVLVQG 607
           RLIGP+G+T++ +E    C + ++G
Sbjct: 133 RLIGPRGMTIRQLEKDLGCKLFIRG 157


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
            protein 2, isoformc protein.
          Length = 936

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +2

Query: 104  NLIKTNME-VEETNSVDNAWAMKIPKFTPDDNPHGL-LEESKFATLFPKYREQYLKEC 271
            N IK  ++  ++T++ D+ +  ++PK TP D    + L++++F   F     +Y++EC
Sbjct: 880  NKIKVLLKSADDTSNFDSEFTHEVPKLTPIDRLFLMNLDQTEFEG-FSFVNPEYVQEC 936


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,978,458
Number of Sequences: 27780
Number of extensions: 244643
Number of successful extensions: 642
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)