Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1j05
         (602 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U25816-1|AAB61242.1|  218|Homo sapiens TATA-binding protein asso...   144   2e-34
U13991-1|AAA62230.1|  218|Homo sapiens TATA-binding protein asso...   144   2e-34
CR541943-1|CAG46741.1|  218|Homo sapiens TAF10 protein.               144   2e-34
BC012088-1|AAH12088.1|  218|Homo sapiens TAF10 RNA polymerase II...   144   2e-34
AF498312-1|AAM14627.1|  218|Homo sapiens TAF10 RNA polymerase II...   144   2e-34

>U25816-1|AAB61242.1|  218|Homo sapiens TATA-binding protein
           associated factor 30 kDa subunit protein.
          Length = 218

 Score =  144 bits (349), Expect = 2e-34
 Identities = 65/106 (61%), Positives = 83/106 (78%)
 Frame = +3

Query: 216 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 395
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 396 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKPHYF 533
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKPHYF
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKPHYF 217


>U13991-1|AAA62230.1|  218|Homo sapiens TATA-binding protein
           associated factor 30 kDa subunit protein.
          Length = 218

 Score =  144 bits (349), Expect = 2e-34
 Identities = 65/106 (61%), Positives = 83/106 (78%)
 Frame = +3

Query: 216 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 395
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 396 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKPHYF 533
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKPHYF
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKPHYF 217


>CR541943-1|CAG46741.1|  218|Homo sapiens TAF10 protein.
          Length = 218

 Score =  144 bits (349), Expect = 2e-34
 Identities = 65/106 (61%), Positives = 83/106 (78%)
 Frame = +3

Query: 216 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 395
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 396 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKPHYF 533
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKPHYF
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKPHYF 217


>BC012088-1|AAH12088.1|  218|Homo sapiens TAF10 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 30kD
           protein.
          Length = 218

 Score =  144 bits (349), Expect = 2e-34
 Identities = 65/106 (61%), Positives = 83/106 (78%)
 Frame = +3

Query: 216 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 395
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 396 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKPHYF 533
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKPHYF
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKPHYF 217


>AF498312-1|AAM14627.1|  218|Homo sapiens TAF10 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 30 k
           protein.
          Length = 218

 Score =  144 bits (349), Expect = 2e-34
 Identities = 65/106 (61%), Positives = 83/106 (78%)
 Frame = +3

Query: 216 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 395
           L DFL+QLE+Y P+IPD+V  YYLN  GFE+ DPR++RLI+LA+QKF+SDI NDALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 396 MRTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKPHYF 533
           M+ +   +  SK+    K++KY +TM+DL PAL EYGI  KKPHYF
Sbjct: 176 MKGTASGSSRSKS----KDRKYTLTMEDLTPALSEYGINVKKPHYF 217


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,873,955
Number of Sequences: 237096
Number of extensions: 1545704
Number of successful extensions: 3368
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3363
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)