Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1j05
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 602 DCTPLNIYFKVKQFQILISC 543
           +C P+N+ F V    ++I C
Sbjct: 695 NCVPINVQFSVLYGFVIIEC 714


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 364  SDKNFCDANAINLTSLGSCDSNPVKFK*YATTESGMDGL 248
            ++ +F D+   N  S   CD + +  + Y     G DG+
Sbjct: 1870 NNSSFNDSKESNEISEAECDRDQLVNRNYGVNARGKDGM 1908


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 363 QIRISVMPMRSI*QVSDPVTRIRLNSNNMRP 271
           QI  S   + S+ + S+   RI+   NN+RP
Sbjct: 313 QIGFSDKQIASVVKSSELAVRIQRQENNIRP 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,179
Number of Sequences: 438
Number of extensions: 2827
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)