Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1j03
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    36   0.004
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   1.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   1.4  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   7.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   7.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    24   9.9  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    24   9.9  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 401 SVCYXCNRTGHFARECTQ 454
           S+CY CN+TGH A ECT+
Sbjct: 36  SICYNCNQTGHKASECTE 53



 Score = 33.5 bits (73), Expect = 0.016
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 407 CYXCNRTGHFARECTQGGV 463
           CY C   GH ARECT+G +
Sbjct: 19  CYNCGENGHQARECTKGSI 37



 Score = 31.1 bits (67), Expect = 0.087
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 407 CYXCNRTGHFARECTQGG 460
           CY C R GH AR+C   G
Sbjct: 85  CYKCGRVGHIARDCRTNG 102



 Score = 29.9 bits (64), Expect = 0.20
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 395 SSSVCYXCNRTGHFARECTQG 457
           S+  CY C   GH AR+CT G
Sbjct: 114 SNMNCYACGSYGHQARDCTMG 134



 Score = 29.5 bits (63), Expect = 0.26
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 389 AMSSSVCYXCNRTGHFARECT 451
           A    +CY CN+ GH A  CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173



 Score = 25.4 bits (53), Expect = 4.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 407 CYXCNRTGHFAREC 448
           CY C   GH  R+C
Sbjct: 60  CYACGTAGHLVRDC 73



 Score = 25.0 bits (52), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 407 CYXCNRTGHFARECTQ 454
           CY C + GH + EC Q
Sbjct: 137 CYSCGKIGHRSFECQQ 152


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 371  HTFRT*AMSSSVCYXCNRTGHFAREC 448
            HT +   +  S CY C +  H  REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 371  HTFRT*AMSSSVCYXCNRTGHFAREC 448
            HT +   +  S CY C +  H  REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 398 SSVCYXCNRTGHFAREC 448
           S VC+ C   GH +++C
Sbjct: 86  SIVCHNCKGNGHISKDC 102


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 404 VCYXCNRTGHFAREC 448
           VC  C   GH AR+C
Sbjct: 335 VCRHCGSIGHIARDC 349


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 99  RSLHXCXKCSRXFLKCN 149
           R++H C  C R  LKC+
Sbjct: 18  RAIHSCLACRRKKLKCD 34


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 404 VCYXCNRTGHFAREC 448
           +CY C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,665
Number of Sequences: 5004
Number of extensions: 20271
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)