Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1j03
(464 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 39 0.010
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 39 0.010
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 39 0.010
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 39 0.010
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 39 0.010
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 39 0.010
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 39 0.010
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 39 0.010
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 39 0.010
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 39 0.010
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 39 0.010
AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein. 32 1.1
AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid b... 31 2.0
U79569-1|AAD00321.1| 269|Homo sapiens no arches protein. 30 3.4
EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and polyadenyl... 30 3.4
CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein. 30 3.4
BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein. 30 3.4
BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domai... 30 3.4
BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and polyadenyl... 30 3.4
AK091495-1|BAC03676.1| 212|Homo sapiens protein ( Homo sapiens ... 30 4.5
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 153 CYRCGESGHLARECT 167
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 152 CYRCGESGHLARECT 166
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 159 CYRCGESGHLARECT 173
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 159 CYRCGESGHLARECT 173
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 151 CYRCGESGHLARECT 165
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 151 CYRCGESGHLARECT 165
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 158 CYRCGESGHLARECT 172
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 38.7 bits (86), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS+ C+ C R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 148 CYRCGESGHLARECT 162
>AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein.
Length = 622
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 356 AVAI*HTFRT*AMSSSVCYXCNRTGHFAREC 448
AVA+ FR M +C+ C R GH REC
Sbjct: 492 AVAVTRQFRQ-NMRGRICFRCGREGHLMREC 521
>AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid
binding protein protein.
Length = 54
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 407 CYXCNRTGHFARECT 451
CY C +GH ARECT
Sbjct: 35 CYRCGESGHLARECT 49
>U79569-1|AAD00321.1| 269|Homo sapiens no arches protein.
Length = 269
Score = 30.3 bits (65), Expect = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 407 CYXCNRTGHFARECTQG 457
CY C GH+A CT+G
Sbjct: 245 CYKCGEKGHYANRCTKG 261
>EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 269
Score = 30.3 bits (65), Expect = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 407 CYXCNRTGHFARECTQG 457
CY C GH+A CT+G
Sbjct: 245 CYKCGEKGHYANRCTKG 261
>CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein.
Length = 269
Score = 30.3 bits (65), Expect = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 407 CYXCNRTGHFARECTQG 457
CY C GH+A CT+G
Sbjct: 245 CYKCGEKGHYANRCTKG 261
>BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein.
Length = 243
Score = 30.3 bits (65), Expect = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 407 CYXCNRTGHFARECTQG 457
CY C GH+A CT+G
Sbjct: 219 CYKCGEKGHYANRCTKG 235
>BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domain
containing 13 protein.
Length = 166
Score = 30.3 bits (65), Expect = 3.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 401 SVCYXCNRTGHFAREC 448
++CY C R+GH A++C
Sbjct: 65 NICYNCGRSGHIAKDC 80
Score = 29.5 bits (63), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 392 MSSSVCYXCNRTGHFARECTQGG 460
MSS + C +GH+AR C +GG
Sbjct: 1 MSSKDFFACGHSGHWARGCPRGG 23
Score = 29.1 bits (62), Expect = 7.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 407 CYXCNRTGHFAREC 448
CY C R GH AR+C
Sbjct: 91 CYTCGRLGHLARDC 104
>BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 244
Score = 30.3 bits (65), Expect = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 407 CYXCNRTGHFARECTQG 457
CY C GH+A CT+G
Sbjct: 220 CYKCGEKGHYANRCTKG 236
>AK091495-1|BAC03676.1| 212|Homo sapiens protein ( Homo sapiens
cDNA FLJ34176 fis, clone FCBBF3016178. ).
Length = 212
Score = 29.9 bits (64), Expect = 4.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 407 CYXCNRTGHFARECTQ 454
CY C + GHF +EC Q
Sbjct: 137 CYNCEKPGHFKKECRQ 152
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,544,226
Number of Sequences: 237096
Number of extensions: 701580
Number of successful extensions: 1490
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -