Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1j02
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    29   0.001
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   2.1  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    27   3.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   3.7  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   6.4  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   8.5  

>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 29.1 bits (62), Expect(2) = 0.001
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 315 QTDAILFDECYPDALLKNCHKIGEGVYGEVFLWRARDGRARVMKIVPIAGHTKVNGED-Q 491
           Q DA+ F +       +   KIGE  Y EV+     D    V K++P        GED Q
Sbjct: 142 QEDALPFSQFVKSQTFE-IQKIGEASYSEVYQASNADDVPVVWKVIPF-------GEDGQ 193

Query: 492 KDYHEIISEIVIA 530
             Y ++++E+ I+
Sbjct: 194 AQYADVLNEVQIS 206



 Score = 27.9 bits (59), Expect(2) = 0.001
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 636 DVFNQVLAVRCVYGSYPSRLLDLWDLYDECKGS 734
           D F  +  V  V G+YPS LL+ WD Y    GS
Sbjct: 212 DGFANLHQVVVVKGTYPSLLLEEWDRYLMQNGS 244


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 375 KIGEGVYGEVF-LWRARDGRARVMKIVPIAGHTKVNG 482
           K+GEG +GEV+   R +DG+   +K   I  HT+  G
Sbjct: 41  KLGEGTFGEVYKSQRRKDGKVYALK--RILMHTEKEG 75


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 375 KIGEGVYGEVFLWRARDGRARV 440
           K+GEG Y  VFL R ++   RV
Sbjct: 16  KVGEGTYAVVFLGRQKETNRRV 37


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 512 DNLVIVLLVFSIDLGMTSNWNYFHYSSSAISSTPK 408
           D + + +L     L    +WN+F+Y++SAI S  K
Sbjct: 475 DGVSMTILTICKILLNNFDWNFFNYNNSAIDSYAK 509


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 318 TDAILFDECYPDALLKNCHKIGEGVYGEV 404
           T  + F+E Y +A +   HK GE +Y  V
Sbjct: 41  TSQLSFEELYRNAYILVLHKYGEKLYNHV 69


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 330 LFDECYPDALLKNCHKIGEGVYGEVF 407
           ++   YP    +   +IGEG YG+V+
Sbjct: 267 IYTYTYPKPAYEKIDQIGEGTYGKVY 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,138
Number of Sequences: 5004
Number of extensions: 63710
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)