Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1j02
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98261-1|CAB10931.1| 920|Caenorhabditis elegans Hypothetical pr... 55 5e-08
Z71266-11|CAA95847.1| 920|Caenorhabditis elegans Hypothetical p... 55 5e-08
Z71258-16|CAA95786.1| 920|Caenorhabditis elegans Hypothetical p... 55 5e-08
AF408763-1|AAO27842.1| 459|Caenorhabditis elegans unknown prote... 55 5e-08
AC024751-3|AAK21513.2| 440|Caenorhabditis elegans Hypothetical ... 54 1e-07
U70845-4|AAB09102.1| 340|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC006753-3|AAN73854.2| 286|Caenorhabditis elegans Hypothetical ... 33 0.16
AL132904-1|CAC35832.2| 385|Caenorhabditis elegans Hypothetical ... 31 1.1
U40952-6|AAA81740.3| 328|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei... 30 2.0
U80839-11|AAB37912.2| 261|Caenorhabditis elegans Hypothetical p... 29 3.4
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 29 3.4
Z49131-2|CAA88975.1| 321|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41549-1|AAA83281.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z48583-1|CAA88470.1| 389|Caenorhabditis elegans Hypothetical pr... 28 7.9
U80452-2|AAK68180.1| 729|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z98261-1|CAB10931.1| 920|Caenorhabditis elegans Hypothetical protein
C01H6.9 protein.
Length = 920
Score = 55.2 bits (127), Expect = 5e-08
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Frame = +3
Query: 213 LSLDDVEPEITVLGIHDTSNRV-ATARDYVLRRCNQTDAILFDECYPDALL-KNCHKIGE 386
+++ + +P I + D ++ + + +L Q ++ +D AL + K+GE
Sbjct: 537 MTIHNEDPSILPFYLEDLTSEIDPSPMMQLLHVVGQKESKTWDSLPKSALDGRRVKKLGE 596
Query: 387 GVYGEVF--LWRARDGRARVMKIVPIAGHTKVNGEDQKDYHEIISEIVIAMELSALRAPI 560
G YGEVF +W DG+ +KIVP + +G +++ + E SE M+ S + P
Sbjct: 597 GAYGEVFSTIW---DGKPVAIKIVPF----EKDGCNRQYFGEYHSE---EMQTSDVVLPE 646
Query: 561 ADIERHFDEGNDTDALDLHAIGNATDVFNQVLAVRCVYGSYPSRLLDLWDLYDECKGS 734
+ + D DA N+T F ++++ V G YP LL WD YD+ K S
Sbjct: 647 VIVMKELSALRDEDAW------NSTPNFIEMISAEVVMGKYPKGLLSAWDSYDKLKES 698
>Z71266-11|CAA95847.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 55.2 bits (127), Expect = 5e-08
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Frame = +3
Query: 213 LSLDDVEPEITVLGIHDTSNRV-ATARDYVLRRCNQTDAILFDECYPDALL-KNCHKIGE 386
+++ + +P I + D ++ + + +L Q ++ +D AL + K+GE
Sbjct: 537 MTIHNEDPSILPFYLEDLTSEIDPSPMMQLLHVVGQKESKTWDSLPKSALDGRRVKKLGE 596
Query: 387 GVYGEVF--LWRARDGRARVMKIVPIAGHTKVNGEDQKDYHEIISEIVIAMELSALRAPI 560
G YGEVF +W DG+ +KIVP + +G +++ + E SE M+ S + P
Sbjct: 597 GAYGEVFSTIW---DGKPVAIKIVPF----EKDGCNRQYFGEYHSE---EMQTSDVVLPE 646
Query: 561 ADIERHFDEGNDTDALDLHAIGNATDVFNQVLAVRCVYGSYPSRLLDLWDLYDECKGS 734
+ + D DA N+T F ++++ V G YP LL WD YD+ K S
Sbjct: 647 VIVMKELSALRDEDAW------NSTPNFIEMISAEVVMGKYPKGLLSAWDSYDKLKES 698
>Z71258-16|CAA95786.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 55.2 bits (127), Expect = 5e-08
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Frame = +3
Query: 213 LSLDDVEPEITVLGIHDTSNRV-ATARDYVLRRCNQTDAILFDECYPDALL-KNCHKIGE 386
+++ + +P I + D ++ + + +L Q ++ +D AL + K+GE
Sbjct: 537 MTIHNEDPSILPFYLEDLTSEIDPSPMMQLLHVVGQKESKTWDSLPKSALDGRRVKKLGE 596
Query: 387 GVYGEVF--LWRARDGRARVMKIVPIAGHTKVNGEDQKDYHEIISEIVIAMELSALRAPI 560
G YGEVF +W DG+ +KIVP + +G +++ + E SE M+ S + P
Sbjct: 597 GAYGEVFSTIW---DGKPVAIKIVPF----EKDGCNRQYFGEYHSE---EMQTSDVVLPE 646
Query: 561 ADIERHFDEGNDTDALDLHAIGNATDVFNQVLAVRCVYGSYPSRLLDLWDLYDECKGS 734
+ + D DA N+T F ++++ V G YP LL WD YD+ K S
Sbjct: 647 VIVMKELSALRDEDAW------NSTPNFIEMISAEVVMGKYPKGLLSAWDSYDKLKES 698
>AF408763-1|AAO27842.1| 459|Caenorhabditis elegans unknown protein
protein.
Length = 459
Score = 55.2 bits (127), Expect = 5e-08
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Frame = +3
Query: 213 LSLDDVEPEITVLGIHDTSNRV-ATARDYVLRRCNQTDAILFDECYPDALL-KNCHKIGE 386
+++ + +P I + D ++ + + +L Q ++ +D AL + K+GE
Sbjct: 245 MTIHNEDPSILPFYLEDLTSEIDPSPMMQLLHVVGQKESKTWDSLPKSALDGRRVKKLGE 304
Query: 387 GVYGEVF--LWRARDGRARVMKIVPIAGHTKVNGEDQKDYHEIISEIVIAMELSALRAPI 560
G YGEVF +W DG+ +KIVP + +G +++ + E SE M+ S + P
Sbjct: 305 GAYGEVFSTIW---DGKPVAIKIVPF----EKDGCNRQYFGEYHSE---EMQTSDVVLPE 354
Query: 561 ADIERHFDEGNDTDALDLHAIGNATDVFNQVLAVRCVYGSYPSRLLDLWDLYDECKGS 734
+ + D DA N+T F ++++ V G YP LL WD YD+ K S
Sbjct: 355 VIVMKELSALRDEDAW------NSTPNFIEMISAEVVMGKYPKGLLSAWDSYDKLKES 406
>AC024751-3|AAK21513.2| 440|Caenorhabditis elegans Hypothetical
protein Y18H1A.10 protein.
Length = 440
Score = 54.0 bits (124), Expect = 1e-07
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Frame = +3
Query: 297 VLRRCNQTDAILFDECYPDAL-LKNCHKIGEGVYGEVF--LWRARDGRARVMKIVPIAGH 467
+LR Q +A + AL + K+GEG YGEVF +W +GR +K++P +
Sbjct: 83 LLRVVGQKEAKPWGSLPTSALDARKVKKLGEGAYGEVFSTVW---NGRPVAIKVLPFENN 139
Query: 468 TKVNGEDQKDY---HEIISEIVIAMELSALRAPIADIERHFDEGNDTDALDLHAIGNATD 638
G + H ++SE+++ ELSALR P + N+T
Sbjct: 140 GCFYGNQSVEIPTTHAVLSEVIVMKELSALRDPNS--------------------WNSTP 179
Query: 639 VFNQVLAVRCVYGSYPSRLLDLWDLYDECKGS 734
F ++++ + V G YP LL WD YD+ S
Sbjct: 180 NFIEMISAQIVMGEYPKGLLRAWDAYDKLNES 211
>U70845-4|AAB09102.1| 340|Caenorhabditis elegans Hypothetical
protein F22H10.5 protein.
Length = 340
Score = 40.3 bits (90), Expect = 0.001
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 363 KNCHKIGEGVYGEVFLWRARDGRARVMKIVPI--AGHTKVNGEDQKDYHEIISEIVIAME 536
KN KIGEG Y E F + ++ VMK++P + + GE + +I+E+ I
Sbjct: 94 KNIAKIGEGCYAEAFS-TIFNNQSVVMKVLPCRDISNGEKCGEHTQGIDAVIAELAILKS 152
Query: 537 LSALRAPIADIERHFDEGNDTDALDLHAIGNATDVFNQVLAVRCVYGSYPSRLLDLWDLY 716
LSAL + H N T+ F +++ + V G +P+ LL WD Y
Sbjct: 153 LSAL-----STKNH---------------ANVTENFVKMVMAKVVIGKHPTSLLKAWDTY 192
>AC006753-3|AAN73854.2| 286|Caenorhabditis elegans Hypothetical
protein Y40A1A.1 protein.
Length = 286
Score = 33.5 bits (73), Expect = 0.16
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
Frame = +3
Query: 285 ARDYVLRRCNQTDAILFDECYPDAL-LKNCHKIGEGVYGEVFLWRARDGRARVMKIVPIA 461
A + +L C QT + + N K+GEG + E F ++ V+K++P+
Sbjct: 45 ALEQLLNNCGQTKPEKWSSLQKGSFDYANVAKVGEGCFAEAFSTTFKNVSV-VVKVLPLR 103
Query: 462 GHTKVNGEDQKDYHEII--SEIVIAMELSALRAPIADIERHFDEGNDTDALDLHAIGNAT 635
+G KD E + +E V+A EL L+ AL N T
Sbjct: 104 -----DGPIGKDCDEYVQRTEAVLA-ELIVLKL--------------LSALSTKNRPNVT 143
Query: 636 DVFNQVLAVRCVYGSYPSRLLDLWDLY 716
+ F +++ + V G YP+ LL WD +
Sbjct: 144 ENFVKLVMTKVVVGKYPTSLLKAWDKF 170
>AL132904-1|CAC35832.2| 385|Caenorhabditis elegans Hypothetical
protein Y111B2A.1 protein.
Length = 385
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 360 LKNCHKIGEGVYGEVFLWRARDGRARVMKIVPIAGHTKVNGEDQKDYHEIISEIVIA 530
L+N +GEGV+G VF + + + + AGHT+ ED EI+ + A
Sbjct: 50 LENVSVLGEGVFGTVFEVADAEKKKKFALKLFKAGHTQFGCEDWVRESEIMKSVAAA 106
>U40952-6|AAA81740.3| 328|Caenorhabditis elegans Hypothetical
protein C03B1.5 protein.
Length = 328
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 375 KIGEGVYGEVFLWRARDGRARVMKIVPIAGHTKVNGEDQKDYHEIISEI 521
KIG G +GEV L + AR +I+ KV + DYH+II E+
Sbjct: 30 KIGSGAFGEVMLVHSDRLDARGEQILHNEFALKVIRFPECDYHKIIREV 78
>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical protein
F54C8.3 protein.
Length = 1027
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 141 MHLTLQYTGFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNRVATARDYVLRR 308
+H T+Q +L DD SK+++ D++PE+ + ++ T RDY RR
Sbjct: 933 IHPTIQLAAYLHDDG-------SKITIGDMKPEVPPIADYEEKTVRKTFRDYQRRR 981
>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
protein.
Length = 1027
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 141 MHLTLQYTGFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNRVATARDYVLRR 308
+H T+Q +L DD SK+++ D++PE+ + ++ T RDY RR
Sbjct: 933 IHPTIQLAAYLHDDG-------SKITIGDMKPEVPPIADYEEKTVRKTFRDYQRRR 981
>U80839-11|AAB37912.2| 261|Caenorhabditis elegans Hypothetical
protein ZC204.3 protein.
Length = 261
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 537 LSALRAPIADIERHFDEGNDTDAL 608
L AL P+A+ E+ F E DTDA+
Sbjct: 90 LVALETPLAEYEKMFSESEDTDAV 113
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 220 SMMWNRRSPF*V-YMILRIVLLQLEITCYVDAIKR 321
S +W +R F + Y++L IVL+ LEI C V + R
Sbjct: 91 SSVWPKRKGFMITYLVLIIVLVSLEIGCGVAVLVR 125
>Z49131-2|CAA88975.1| 321|Caenorhabditis elegans Hypothetical
protein ZC373.3 protein.
Length = 321
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 363 KNCHKIGEGVYGEVFLWRARDG-RARVMKIVPIAGHTKVNGEDQKD 497
K HK+G G +GEV W+A D V KIV I + V G +D
Sbjct: 37 KLIHKVGSGSFGEV--WQATDKLEGNVAKIVKII-NKYVGGSGPRD 79
>U41549-1|AAA83281.1| 299|Caenorhabditis elegans Hypothetical
protein F22F1.2 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 375 KIGEGVYGEVFLWR-ARDGRARVMKIVPIAGHTKVNGEDQKDYHEIISEIVIAMELSALR 551
K+GEG YG+V+ R R+ + V+K++ H ++NG + + L+AL
Sbjct: 16 KLGEGSYGDVYFCRDERNNKWSVIKLI----HKEINGVRDETWRR------ETFALTAL- 64
Query: 552 APIADIERHFDEGNDTDALDLH 617
A + I R +D G A D+H
Sbjct: 65 AEVRGISRMYDYG----ATDIH 82
>Z48583-1|CAA88470.1| 389|Caenorhabditis elegans Hypothetical
protein F54B3.2 protein.
Length = 389
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 183 CDDTIVGLSKLSLDDVEPEITVLGIHDTSN-RVATARDYV 299
C D +GLS LS PEI VL H++++ R+ +A D V
Sbjct: 49 CHDVPLGLSNLSTITNIPEIVVLREHNSNDIRMTSALDDV 88
>U80452-2|AAK68180.1| 729|Caenorhabditis elegans Hypothetical
protein C16C8.2 protein.
Length = 729
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 145 CMHLALDTFNGTKNRQKKPIIPLRIMAVTQI 53
C HL +F+GT N KKP+I A+ ++
Sbjct: 199 CYHLRYRSFDGTCNNLKKPMIGSAFTALMRL 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,067,049
Number of Sequences: 27780
Number of extensions: 359128
Number of successful extensions: 957
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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