Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1i22
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 30 0.16
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 29 0.36
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 27 1.1
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 27 1.9
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 27 1.9
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 3.4
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 4.5
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 5.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.8
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 25 7.8
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 25 7.8
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 30.3 bits (65), Expect = 0.16
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 146 MTETRRKQLHLGKCIEDLDXLHNVPDLKTKRANLLCKTAQKLFESAEEARKNGDEEYSYV 325
+T T+ + L L +++ L + D+ +RAN + + S E DE+Y ++
Sbjct: 862 LTITKERVLQLTNDLQEEQALAHEKDILVERANSRVEVVHERLSSLENQVTIADEKYEFL 921
Query: 326 YYMKYLRVIAYLSKDKE--YLKDKS 394
Y K +K E YL D S
Sbjct: 922 YAEKQSIEEDLANKQTEISYLSDLS 946
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.1 bits (62), Expect = 0.36
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 185 CIEDLDXLHNVPDLKTKRANLLCKTAQKLFESAEEARKNGDEEY 316
CIE + + + P LKT L+CK +K F + + +EY
Sbjct: 23 CIECHNEIADHPLLKTSELTLICKKCRKAFRIQFDQTMDESDEY 66
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 367 FAQIGYDSQIFHVIYVGVLLVTIFPSFFGAFKQFLC 260
F +IG ++ +F + + +L+++ FPSF + LC
Sbjct: 3 FNKIGDENVVFQIFKLEMLIMSEFPSFIEEKDKLLC 38
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 359 LSKDKEYLKDKSYYNSMLGAKNPNKAID 442
L KD Y+K KS+ G + P KA+D
Sbjct: 19 LQKDHIYVKKKSHIKLNTGVRAPFKAVD 46
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 96 NHTESVSHTVXAHQN-GE*RKHAV 164
+H E HTV AH+N E RKH +
Sbjct: 115 DHLEQQMHTVGAHRNKNESRKHTI 138
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 206 LHNVPDLKTKRANLLCKTAQKLFESAEEARKNGDEEYSYVYYM 334
++ P+L+ ++L KLF+ A E K GD + Y Y+
Sbjct: 44 MYEDPELQDYALSIL--PLDKLFQDASELEKEGDGSWGYQDYV 84
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +2
Query: 221 DLKTKRANLLCKTAQKLFESAEEARKNGDEEYSYVYYMKYLRV 349
D + + + + A +++++A A+K GD+ + YY + L V
Sbjct: 15 DKEKRTLEIRIEEAVQIYQNALSAQKQGDDNAATKYYDELLNV 57
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 12 FLFEADNFQQNNHKIYLPNVV-NSDIRIFNHTES 110
+++ D F ++++ LPNVV S++ + H +S
Sbjct: 708 YIYTYDEFYKDDYATSLPNVVYTSEVLLSKHNDS 741
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 398 SMTYPSDTPYLCSDRL*LSNISCNIRRSTPRHHFSELLRRFQT 270
SMT P + ++ SN+S +R TPR H +LRR T
Sbjct: 54 SMTASEQIPLVTNNGNGNSNVSTQYQRLTPREH---VLRRPDT 93
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +2
Query: 245 LLCKTAQKLFESAEEARKNGDEEYSYVYYMKYLRVIAYLSKDKEYLKDKSYYNSMLGAKN 424
LL KT + F+ EA + + +++ +++ RV +DK K+Y ++ ++
Sbjct: 5 LLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHKRVHEEQLRDKLKNVRKTYCGLIVTSQR 64
Query: 425 PNKAIDAAEK 454
++ +D A K
Sbjct: 65 VSETLDEALK 74
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 164 KQLHLGKCIEDLDXLHNVPDLKTKRANLLCKTAQKLFESAEEARKN 301
+++ LG D+D L N + KRA + K K ++E+A ++
Sbjct: 208 REVDLGIISTDVDNLKNGRKRQKKRARMKEKLDSKALRTSEDAARD 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,657
Number of Sequences: 5004
Number of extensions: 35135
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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