Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1i22
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   2.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.9  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 278 SAEEARKNGDEEYSYVYYMKYLRVIAYLSKDKEYL 382
           S++  R+  D EY   Y+M+ + + AY    +E L
Sbjct: 207 SSKNMREYNDPEYKLDYFMEDVELNAYYYYMREML 241


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 278 SAEEARKNGDEEYSYVYYMKYLRVIAYLSKDKEYL 382
           S++  R+  D EY   Y+M+ + + AY    +E L
Sbjct: 207 SSKYMREYNDPEYKLDYFMEDVELNAYYYYMREML 241


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -2

Query: 404 CCSMTYPSDTPYLCSDRL*LSNISCNIRRSTPRHHFS 294
           CC M +P D   L +     SN   N  ++   +H++
Sbjct: 88  CCGMRWPGDATGLSNRSSTSSNDPKNQYKNQNNNHYT 124


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 377 YLKDKSYYNSMLGAKNPNKAIDAAEKLKNSLI 472
           YLKD     S +   +P      A+++KN ++
Sbjct: 188 YLKDAWIGRSFIDYVHPKDKATLADQIKNGIV 219


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 377 YLKDKSYYNSMLGAKNPNKAIDAAEKLKNSLI 472
           YLKD     S +   +P      A+++KN ++
Sbjct: 183 YLKDAWIGRSFIDYVHPKDKATLADQIKNGIV 214


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 82  ILGSSIIPNLYHIQCXRIKTENDGN 156
           ILG+++   + + +C R   +N GN
Sbjct: 405 ILGANVDDLMRNTRCGRYHNQNAGN 429


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 30  NFQQNNHKIYLPNVVNSDIRIFNHTESVSHTVXAHQ 137
           NF +NN  + +  +VN       +T SV+  +  +Q
Sbjct: 508 NFSKNNTIVDISKLVNKRNNAKIYTSSVNSNLTVNQ 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,784
Number of Sequences: 438
Number of extensions: 2237
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)