Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1i13
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 3.3
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 26 3.3
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 3.3
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 3.3
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 5.8
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 25 5.8
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 25 5.8
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 25 7.6
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 7.6
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 7.6
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 3.3
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 34 RETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSCHGYLS 213
R+ +R +R P+ R+++ Y R SR+ R Y R S+ +S H Y
Sbjct: 151 RDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSR--RRYEER--SSRSSRAHDYDY 206
Query: 214 ADLRARIR*CVRAPIRS---QRAAALSQ 288
DLR R R RS +R++ LS+
Sbjct: 207 EDLRDDDRSHERKRSRSRPRERSSKLSE 234
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 3.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 25 PISRETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSC 198
P+S A + T RRP RR+++ ++ E V+ T+D S SR G + C
Sbjct: 200 PLSSTKHAPQSTERRPVRRSES-RLKQTNGEPLVK---HDTLDSSDISREGEQLYCYC 253
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 3.3
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +1
Query: 64 RRPARRAKNISVQYKRREAAVQSPSR--TTIDRSYRSRRGSTVASSCHGYLSADLRARIR 237
RRP R K I + + A + + + + +AS H Y+ ADL A +R
Sbjct: 433 RRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVR 492
Query: 238 *CVRAPIRS-QRAAALSQVTPG 300
A +R+ +R +L + T G
Sbjct: 493 ---EAALRAIKRTISLQKDTSG 511
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = +1
Query: 19 NLPISRETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASS 195
N+P S +R+P R ++ + R+ + S R T ++ ++ S +A S
Sbjct: 35 NIPRSSAKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADS 93
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +3
Query: 12 RLKPAY---ITRDDGKREDKQKTSEASEEHQRPVQKTRSGR 125
R KP Y R R + + E SEE RP+ + R+ R
Sbjct: 113 RSKPKYKPGTRRSTRLRNRRSQDEEESEEEHRPILRERTSR 153
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 38 RRWQERRQTEDQRGERRTSASSTKDEKRPYSHLP 139
R+ + RR + DQRG +R S+ T E P++ +P
Sbjct: 60 RKGKGRRSSLDQRG-KRASSIGTGFEALPHADVP 92
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 5.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 143 VREGDCTAASRLLYWTLMFFARLAGLLFVFSLAIVSRDI 27
+ +G C+A L MFF L G+ ++ SL I RDI
Sbjct: 331 ITKGHCSA----LKADQMFFQLLDGVAYMHSLGIAHRDI 365
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 24.6 bits (51), Expect = 7.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 101 WTLMFFARLAGLLFVFSLAIVS 36
W L F A + GLLF + ++S
Sbjct: 88 WVLAFAAGIGGLLFGYDTGVIS 109
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 33 TRDDGKREDKQKTSEASEEHQRPVQKTRSGRTVTFPD 143
++ +G ED Q TS EEH KT+ + F D
Sbjct: 165 SQPEGNLEDIQ-TSSQEEEHDNEKDKTKESKAKGFLD 200
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 24.6 bits (51), Expect = 7.6
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 22 LPISRETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVAS 192
LPI E ++ KT RP + S+++ +E ++ R T + ++ R S VAS
Sbjct: 21 LPIDAEDLSSRKTYARPVLIRQYRSLRFANKE---ENICRLTPNSAFVPVRDSAVAS 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,681
Number of Sequences: 5004
Number of extensions: 33064
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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