Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1i09
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p... 111 1e-25
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 58 2e-09
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 52 6e-08
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 41 2e-04
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 40 4e-04
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 36 0.005
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 34 0.018
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.69
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 27 2.1
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 27 3.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.7
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 4.9
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 26 4.9
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 26 6.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 6.4
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.4
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 6.4
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 26 6.4
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 8.5
>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 111 bits (267), Expect = 1e-25
Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 2/142 (1%)
Frame = +1
Query: 106 RLNVKKQTLDDAYAAPANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVR 285
R +++QT Y P N LEIDV+NP T G+G+ +T YE+ RTN+P F++ +SSVR
Sbjct: 6 RPEIRQQTTQQMYDVPENILEIDVINP-QTHGIGRNMFTTYEIVCRTNMPYFRLHNSSVR 64
Query: 286 RRYSDFEWLRNELERDS-KIVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFIN 462
RRYS+FE + LER+S ++ +PPLPGK ++ FR +GLE F+
Sbjct: 65 RRYSEFEKFHDMLERESGRVSIPPLPGKIFTQR--FR-------DDVIEERRQGLENFLR 115
Query: 463 KIAGHPLAQ-NERCLHMFLQEP 525
+AGHPL Q + R L FLQ P
Sbjct: 116 LVAGHPLIQTHSRVLSSFLQSP 137
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 57.6 bits (133), Expect = 2e-09
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +1
Query: 217 YTDYEVRMRTNLPVFKVKDSSVRRRYSDFEWLRNELERD-SKIVVPPLPGKALKRQLPFR 393
+ YE+ ++LPVF+ K SVRRRY DFE L N L D + +PPLP K
Sbjct: 20 FVSYEIETESDLPVFEDKKFSVRRRYKDFEMLHNILSHDYNGYAIPPLPRKYTVSSF--- 76
Query: 394 XXXXXXXXXXXXXXXKGLEVFINKIAGHPLAQNERCLHMFLQ 519
+ L+ F+++ + HP+ N ++ FL+
Sbjct: 77 -SGGSLSPIFIARRMQSLQTFLDRCSTHPVISNSMHMYQFLE 117
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 52.4 bits (120), Expect = 6e-08
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Frame = +1
Query: 130 LDDAYAAPANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYSDFEW 309
LD+ +FL+ V P + + + Y + +TNL +F + VRRR+SDF
Sbjct: 7 LDEPSTNSTHFLQCLVTEPRKELQGSRDTHVSYLIITKTNLSIFTRAECKVRRRFSDFVK 66
Query: 310 LRNELER-DSKIVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPLA 486
L+ L R + VVPPLP K +L + K L +I + A HP+
Sbjct: 67 LQEILSRMNEDCVVPPLPA---KHKLEY-IKGGRFSDNFINRRAKLLNRYITRCALHPVL 122
Query: 487 QNERCLHMFLQEPTID---RSYVPGKIRNT 567
FL+ P + R ++ K+ NT
Sbjct: 123 HQSPHFIAFLENPNWNNYVRFFIQPKLNNT 152
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 40.7 bits (91), Expect = 2e-04
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Frame = +1
Query: 169 IDVLNPVTTMGVGKKRYTDYEVRMRT---NLPVFKVKDSSVRRRYSDFEWLRNELERDSK 339
I V +P T + K +T Y V R N P V + +V+RRY+DF +L L +
Sbjct: 204 IQVHDPHTVKEITKS-HTVYSVSTRLEEHNQP--SVSNVTVQRRYNDFAFLYQLLSNNHP 260
Query: 340 -IVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPLAQNERCLHMFL 516
++PP+P K + + LEV + KI+ HP+ +++ +FL
Sbjct: 261 GCIIPPIPEKQVVGRFD---------DEFIEQRRAALEVMLRKISAHPVLRDDYSFKLFL 311
Query: 517 QEPTID 534
+ T D
Sbjct: 312 EAETFD 317
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 VFKVKDSSVRRRYSDFEWLRNELER-DSKIVVPPLPGKALKRQLPFRXXXXXXXXXXXXX 432
+ K++DS + RYS+F LR +L R +VPPLP K
Sbjct: 92 IIKLQDSEIHHRYSEFASLRVQLSRLYPTCLVPPLPDKHKIMDYLINVTKNQRMSRMLEE 151
Query: 433 XXKGLEVFINKIAGHPLAQNERCLHMFL 516
+ L++F+ ++A HP+ FL
Sbjct: 152 RKRLLQLFLRRVAQHPILGLSEVFRKFL 179
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 36.3 bits (80), Expect = 0.005
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +1
Query: 280 VRRRYSDFEWLRNELERDSKIV-VPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVF 456
V RRYSDF WL + L + VP +P K + GL F
Sbjct: 317 VLRRYSDFFWLHSYLMKKYPFRRVPLIPLKKFHSKC-------FNSKQFFRTPPPGLSDF 369
Query: 457 INKIAGHPLAQNERCLHMFLQEPTIDRSY 543
+N ++ HP+ N+ + +F EP + +++
Sbjct: 370 VNDLSHHPIFSNDEVVRVFFTEPNVFKNW 398
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 34.3 bits (75), Expect = 0.018
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 277 SVRRRYSDFEWLRNELERD-SKIVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEV 453
SV RRYSDFE L + R +VPP+PGK + LE+
Sbjct: 51 SVWRRYSDFESLVKLMRRQYPAAIVPPIPGKQSLLSYAKHPRKAKSDAEFLNFRSRMLEL 110
Query: 454 FINKIAGHPLAQNERCLHMFL 516
F+ + HP ++ F+
Sbjct: 111 FLRQCLLHPCIRSNPIFDKFI 131
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 29.1 bits (62), Expect = 0.69
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 504 PHVPAGAHHRQELRARQDQEHITVHAAPSPEPRLCSSPRAPPTSGSRT 647
P P AH R+ +DQ + V AP+P P SS PP++ R+
Sbjct: 244 PFSPPNAHSRRRKSQGKDQSNTPVIKAPAPIPFSVSSD--PPSTMGRS 289
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 109 LNVKKQTLDDAYAAPANFLEIDVLNPVTTMGVGKKRYTD 225
LNV +TL+ Y +PA+F I V+ + V KR D
Sbjct: 603 LNVDIKTLEPEYTSPASFFTILNRRRVSDISVNFKRSAD 641
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 545 T*LLSMVGSCRNMWRQRSFCASGCPAILLMNTSRPF 438
T L + G C MW++ ASG P +L + +R F
Sbjct: 445 TVLANACGPCIGMWKRTDDIASGEPNAILTSFNRNF 480
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 485 RRTSAASTCSCRSPPSTGATCPARSGTHNCTRRAVTRAEALQQSSRPTD 631
+RT+ A + +P STG + + + TR+ + L S+ TD
Sbjct: 5 KRTNRAKAATAAAPNSTGKSNGIKKAVYTSTRKKTVGVDDLTLLSKITD 53
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 396 ASERQLSLQSFAGQGRYDYLAVPLQFIPEPLEVAIPPSDARIFHFE 259
A +L+L SF +D++ VP F ++ A+ +RI HF+
Sbjct: 366 ADSDRLNL-SFGTIKEFDFVGVPAPFTKSQVDSAVEQLKSRIAHFK 410
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 428 RTAEKVWKCS----STR*PGTRWRRTSAASTCSCRS 523
RTA +WKCS S G W T+AA+T S RS
Sbjct: 49 RTAAGIWKCSGKGCSKTLAGGAWTVTTAAAT-SARS 83
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 732 RSLRHSCSVVPMMIPVH 682
R+ H C+V+P+MIPV+
Sbjct: 147 RTAPHLCTVLPIMIPVY 163
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 176 TSISKKFAGAAYASSNVCFLTLR 108
+SI ++F G+AY + +CF L+
Sbjct: 1203 SSIMREFGGSAYCLAELCFAILK 1225
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 473 GTRWRRTSAASTCSCRSPPSTGATCPARSGTHNCT--RRAVTRAEALQQSSRPTDIGESH 646
G + TSA+ST S + PS+ +T + S + + T ++T + + SS + S
Sbjct: 131 GGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASS 190
Query: 647 AGVI 658
+G I
Sbjct: 191 SGSI 194
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 453 HFQTFSAVLYKFLLKYTIIASERQLSLQSFAGQGRYDY 340
HF+ + V Y+ LL+YT + ER ++S+ R+ +
Sbjct: 932 HFEGYERVFYELLLRYT-YSDER---IESYPSDSRFHF 965
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 216 LHGLRSSYEDKPTRFQSERFERQTA 290
L GL+ Y D ++FQ E FE + A
Sbjct: 82 LRGLQKRYSDLESQFQKELFELEKA 106
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 579 RVQLCVPDLAGHVAPVDGGLLQEHVEAALVLRQR 478
++Q PDL GH+ D L E+++ A+ +R R
Sbjct: 400 QMQQIPPDLTGHLEEEDERLNDEYLDKAVDVRVR 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,109
Number of Sequences: 5004
Number of extensions: 56392
Number of successful extensions: 166
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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