Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1i09
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.74 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 567 ITVHAAPSPEPRLCSSPRAPPTS 635
           +  +++PSP PR+ S+P +  +S
Sbjct: 505 VETNSSPSPNPRIASAPSSSTSS 527


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 531 RQELRARQDQEHITVHAAPSPEPRLCSSPRAP 626
           +Q +  +Q Q+  +   AP P+P    SP+AP
Sbjct: 5   KQPIITQQSQQPSS--GAPGPQPSPHQSPQAP 34


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 641 TPRCRWGARTAAKPRL 594
           TP  RW A+T ++P L
Sbjct: 266 TPEYRWYAQTGSEPML 281



 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 504  PHVPAGAHHRQELRARQDQEHITVHAAPSPEPR 602
            P  PAG     E RA    E +   + P PE R
Sbjct: 1003 PQRPAGPPINLEARALSSSEILITWSPPLPELR 1035


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 641 TPRCRWGARTAAKPRL 594
           TP  RW A+T ++P L
Sbjct: 266 TPEYRWYAQTGSEPML 281



 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 504  PHVPAGAHHRQELRARQDQEHITVHAAPSPEPR 602
            P  PAG     E RA    E +   + P PE R
Sbjct: 999  PQRPAGPPINLEARALSSSEILITWSPPLPELR 1031


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 501 PPHVPAGAHHRQELRARQDQEHITVHAAPSPEPRLCSSPRAPPTSGSRTL 650
           P ++ + ++H+Q+LR R     +TV    +PE +L       P     T+
Sbjct: 131 PIYIESFSYHKQKLRLRWGTGAVTV----NPELKLLQYDIGKPVVAEETV 176


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 277 SVRRRYSDFEWLRNELERDSKIVVPPLPGKA 369
           S  + Y +   LRN    D   +VPP+ G A
Sbjct: 368 SFMKHYENEMRLRNGCPADWLWIVPPISGSA 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,834
Number of Sequences: 438
Number of extensions: 4747
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)