Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1i07
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.0  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    27   4.0  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   7.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   9.2  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   9.2  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +1

Query: 673  KNSKEFIVNLSSFSYICPHLHETKMLFH*RTDFKK 777
            K++ + I+NLS FS I  +L + + +FH  ++++K
Sbjct: 3167 KDAIDAILNLSPFSPIAEYLSKLERVFHLLSEWEK 3201


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 652 PNLVLTEKNSKEFIVNLSSFSYICPHLHETKMLFH 756
           PN++     S E +++   F  + P+  E+ MLFH
Sbjct: 15  PNMLRAANRSSEALLDNEKFGGVQPYSTESGMLFH 49


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 501 REGNRSSSVTVVLVAHSAGLDLRAVSDRGVGGELDN 394
           REG      T+VLV    G +L+A    G GG  ++
Sbjct: 311 REGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFES 346


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 121 ETGYCIKCYQCNSEQDKNCG 180
           ++ YC+KC+Q    +  +CG
Sbjct: 398 QSHYCLKCFQVKPPRSYHCG 417


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = +1

Query: 250 YLRNILPVEVLNSVTGAPRYC----HKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNT 417
           Y  + LP+  ++  T A R      ++ + + G V    L++  N       V  LAS  
Sbjct: 509 YDADCLPMTFIHIATSAARIILVKLNENIPEDGDVCNIYLEIITNALDVCANVWPLASQA 568

Query: 418 AIADSAKVKSCAVCNKDN 471
           + A     KSCA   K+N
Sbjct: 569 SRAILNAYKSCATSPKEN 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,928
Number of Sequences: 5004
Number of extensions: 63202
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)