Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1i04
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    28   1.8  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    28   1.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.3  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    27   2.3  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    27   2.3  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.3  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    27   4.0  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   5.4  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    26   7.1  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    26   7.1  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   7.1  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    26   7.1  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   9.4  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   9.4  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   9.4  

>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 360 DAHCDNVQHQTDDPSTSSSLHSLGLPRTPSKLPIAQRKTSTF 235
           D+ C+N++       T+++  SL  P+TP KL I    +  F
Sbjct: 259 DSSCENIRILGFKAETNAATISLFAPKTPEKLQITLSSSDVF 300


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 315 TSSSLHSLGLPRTPSKLPIAQRKTSTF 235
           +S+  H LGLP  PS +P+   +  +F
Sbjct: 311 SSTIRHKLGLPEVPSAMPVPNAQNESF 337


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 354 EHHNKQFDHDAFLGEDQAKTFDQLSPEE--SKRRLGEIADKIDSDQDGFITLV 506
           E +++QF +   L E       +++ +E   KRRL   A K   D+DGF+T+V
Sbjct: 136 ESYDRQFVNPRVLAESVDSYMKRVTKKEIAEKRRL--FAMKNQPDEDGFVTVV 186


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 288  VPTNEETKRLMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAKTFDQLSPEESKRRLGEIAD 467
            V   E + R+   LSD      +H         F  ED   ++DQ SPE ++ R   I+ 
Sbjct: 1061 VRLEELSTRVSKMLSDINEV--DHTIASLSLKLFQAEDTKNSYDQTSPEATQERNRTISS 1118

Query: 468  KI 473
            K+
Sbjct: 1119 KL 1120


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/92 (19%), Positives = 39/92 (42%)
 Frame = +3

Query: 390 LGEDQAKTFDQLSPEESKRRLGEIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERH 569
           +GE +    D    +  K  + +   +I    +G   L E + +++  Q       ++R 
Sbjct: 72  IGEFELALCDAKQSDRIKPDVPKTQSRIRQAYEGLSILNEAEVYLKNKQAGLALNALDRL 131

Query: 570 WRQQNPNNEEFVTWEAYRKNVYGFMDDMDEKE 665
            R+ +   +  ++W   +  VY F +DMD  +
Sbjct: 132 QRRIDSTTQPPMSWMYLKAQVYIFQNDMDRAQ 163


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 384 RHDQTACY-DAHCDNVQHQTDDPSTSSSLHSLGLPR 280
           R +Q   Y D HC +  H T  P++  + HS  L R
Sbjct: 223 RQNQYFFYLDPHCTHFAHTTTQPASEETFHSATLRR 258


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 309 KRLMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAK---TFDQLSPEESKRRLGEIADKI 473
           +RL +HL +++    +H NK+ D +    E++ K     ++  PE  K+  G   +K+
Sbjct: 179 QRLAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKV 236


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/69 (18%), Positives = 33/69 (47%)
 Frame = +3

Query: 420 QLSPEESKRRLGEIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERHWRQQNPNNEE 599
           ++   +++  + E     D D +G+IT+ EL   +    +R   E+V    R+ + + + 
Sbjct: 77  KMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDG 136

Query: 600 FVTWEAYRK 626
            + +E + +
Sbjct: 137 VINYEEFSR 145


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 342 VQHQTDDPSTSSSLHSLGLPRTP 274
           V HQ   P TS+S+ S GL +TP
Sbjct: 413 VYHQVFYPPTSTSVSSYGLGKTP 435


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 205 VQRMFLIIRPKC*GLSLCYWQF 270
           +Q++ L+I  KC G  L  WQF
Sbjct: 80  IQKLILVITSKCSGEDLERWQF 101


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/59 (20%), Positives = 28/59 (47%)
 Frame = +3

Query: 417 DQLSPEESKRRLGEIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERHWRQQNPNN 593
           ++L   ES+    +     D D  G+I   +  D+++   ++  D +V+   ++ +P N
Sbjct: 69  NKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTN 127


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 558 VERHWRQQNPNNEEFVTWEA 617
           +E HW+   P+ E+  TW+A
Sbjct: 159 IEEHWQLLCPDREKVQTWQA 178


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 594 EEFVTWEAYRKNVYGFMDDMDEKELKAPNSEGFTYSNLQ 710
           E+FV W  +  N+YG    M  +EL+A N +     +LQ
Sbjct: 82  EKFVEWAVFSGNMYG-TSIMAIQELEAVNKKAILDIDLQ 119


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 651 MDEKELKAPNSEGFTYSNLQKRDRR 725
           MD   +  PNS+G + S +Q+R +R
Sbjct: 81  MDSPTILEPNSQGISRSAVQERSKR 105


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 322 IICLMLNIIAMSIITSSLIMTPFW--ERTRPKLS 417
           +IC    I A+ ++  S +  PFW  ERT  KL+
Sbjct: 193 LICSTCTISAVLLLIVSSVCIPFWTFERTLAKLA 226


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/61 (21%), Positives = 29/61 (47%)
 Frame = +3

Query: 171 FTKIFFAAGIFCSTHVFNN*AKMLRSFFVLLAISMVFAGVPTNEETKRLMDHLSDAEHYR 350
           F + F+A  I     +FN    +  S  ++  + ++ A +P + +   L++ L   ++Y 
Sbjct: 111 FLQRFYAHAILFVMELFNKEQYLQSSKLLIFCLRILPADLPNDHQCHILVNRLESCKNYL 170

Query: 351 N 353
           N
Sbjct: 171 N 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,225
Number of Sequences: 5004
Number of extensions: 72856
Number of successful extensions: 262
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)