Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1h07
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    25   0.70 
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   2.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = +2

Query: 356 AYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTE-----FRTQFSDDERAFGYLRLQM 517
           A ED  S     E A    +  R VCS +     E     FR +F  DER   Y++  M
Sbjct: 18  AIEDTMSKKMTIEEAKKTIKNLRKVCSKKNDTPKELLDGQFRGEFPQDERLMCYMKCIM 76


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 259 SHELLRSQQSTVFQFGMSHQTDTCV 185
           +H +LR  Q T   FG++  +  C+
Sbjct: 34  THNILRGMQFTDITFGVNKWSKVCI 58


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -1

Query: 583 HRHVRSYPRHEHKFLAFRH 527
           H H+ + P H H   A  H
Sbjct: 423 HSHIHATPHHHHSHAATPH 441


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 385 CSVGPHIFVSRPNRFPVQAGRHGYFSRSILH 293
           C +    F     R P+Q G  GY  R +++
Sbjct: 130 CPMNLENFPMDTQRCPLQFGSFGYTKRDVIY 160


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 427 YPGAFKLEHRPLGRCSVGPHIFVSRPNRFP--VQAGRHGYFSRSIL 296
           Y G   +  R  G+ S G HI V+ P R    V+ GR  + S   L
Sbjct: 308 YGGTSVMHQR--GKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFL 351



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 547 YVHDVGRTERV 579
           YVH +GRT RV
Sbjct: 535 YVHRIGRTGRV 545


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 610 VGGHLGSVDHRHVRSYPRHE 551
           +GG    V+   VR YPR++
Sbjct: 446 IGGDSDLVERYEVRCYPRYD 465


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +2

Query: 401 VFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRLQM 517
           V K+ G  ++C    +      T+ + D+R+    R++M
Sbjct: 282 VCKWPGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRM 320


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 277 QTLRHCSHELLRSQQSTVFQFGM 209
           Q  RH   ELLR  ++ VF  G+
Sbjct: 11  QERRHIRRELLRWTKNMVFVVGL 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,105
Number of Sequences: 438
Number of extensions: 4795
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)