Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1g22
         (147 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    23   4.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    23   5.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    22   9.6  

>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
 Frame = -2

Query: 89  KPAHTR---RGRRQTKSVSSWRSGYL 21
           KP   R   R R  TKS + W  GY+
Sbjct: 44  KPVEARKLIRNRLMTKSTTGWCEGYI 69


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 60  PSSSPCVRWLLTPHLHQELMTYW 128
           PS S C   L     H+E +TYW
Sbjct: 431 PSDSHCKVSLPAVRDHEEKLTYW 453


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 51  LCLPSSSPCVRWLLT--PHLHQELMTYWQS 134
           +CL + S  +R LL+  PHLH    + WQS
Sbjct: 124 VCL-NFSKALRLLLSHSPHLHHLRFSDWQS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,332
Number of Sequences: 5004
Number of extensions: 5798
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 29
effective length of database: 2,217,362
effective search space used: 42129878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)