Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1g22
         (147 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   5.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    19   5.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   7.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   7.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    18   9.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       18   9.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 79  CAGF*RHTCTKN 114
           C GF R + TKN
Sbjct: 207 CKGFFRRSITKN 218


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 79  CAGF*RHTCTKN 114
           C GF R + TKN
Sbjct: 4   CKGFFRRSITKN 15


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +3

Query: 117 MTYWQSSCI 143
           M +WQ SC+
Sbjct: 382 MGHWQMSCV 390


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 84  WLLTPHLHQELMT 122
           W L PH+  +L T
Sbjct: 101 WSLVPHMAWQLST 113


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 73  GEDEGKQSQSXLGAVV 26
           GED+  Q +   GA+V
Sbjct: 524 GEDDNMQVRIIAGAIV 539


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 43  ETDFVCLRPRRVCA 84
           E +F   RP+R C+
Sbjct: 577 EVEFYKRRPQRACS 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,193
Number of Sequences: 438
Number of extensions: 377
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 29
effective length of database: 133,641
effective search space used:  2539179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)