Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1g17
         (721 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007417-1|AAP36085.1|  346|Homo sapiens X-ray repair complement...    30   9.6  
BC011725-1|AAH11725.1|  346|Homo sapiens X-ray repair complement...    30   9.6  
BC001036-1|AAH01036.1|  346|Homo sapiens X-ray repair complement...    30   9.6  
AF508041-1|AAM23015.1|  346|Homo sapiens X-ray repair complement...    30   9.6  
AF037222-1|AAC04805.1|  346|Homo sapiens XRCC3 protein.                30   9.6  
AF035586-1|AAC05368.1|  346|Homo sapiens X-ray repair cross-comp...    30   9.6  

>BT007417-1|AAP36085.1|  346|Homo sapiens X-ray repair complementing
           defective repair in Chinese hamster cells 3 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 EKLLSGDPVLEDIAWVGLPQDGPMTY*ASRESAGCRQRRTGLC 331
           ++L  G PVL+ +   GLP DG +T  A R SAG  Q    LC
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDG-ITELAGRSSAGKTQLALQLC 121


>BC011725-1|AAH11725.1|  346|Homo sapiens X-ray repair complementing
           defective repair in Chinese hamster cells 3 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 EKLLSGDPVLEDIAWVGLPQDGPMTY*ASRESAGCRQRRTGLC 331
           ++L  G PVL+ +   GLP DG +T  A R SAG  Q    LC
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDG-ITELAGRSSAGKTQLALQLC 121


>BC001036-1|AAH01036.1|  346|Homo sapiens X-ray repair complementing
           defective repair in Chinese hamster cells 3 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 EKLLSGDPVLEDIAWVGLPQDGPMTY*ASRESAGCRQRRTGLC 331
           ++L  G PVL+ +   GLP DG +T  A R SAG  Q    LC
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDG-ITELAGRSSAGKTQLALQLC 121


>AF508041-1|AAM23015.1|  346|Homo sapiens X-ray repair complementing
           defective repair in Chinese hamster cells 3 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 EKLLSGDPVLEDIAWVGLPQDGPMTY*ASRESAGCRQRRTGLC 331
           ++L  G PVL+ +   GLP DG +T  A R SAG  Q    LC
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDG-ITELAGRSSAGKTQLALQLC 121


>AF037222-1|AAC04805.1|  346|Homo sapiens XRCC3 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 EKLLSGDPVLEDIAWVGLPQDGPMTY*ASRESAGCRQRRTGLC 331
           ++L  G PVL+ +   GLP DG +T  A R SAG  Q    LC
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDG-ITELAGRSSAGKTQLALQLC 121


>AF035586-1|AAC05368.1|  346|Homo sapiens X-ray repair
           cross-complementing protein 3 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 EKLLSGDPVLEDIAWVGLPQDGPMTY*ASRESAGCRQRRTGLC 331
           ++L  G PVL+ +   GLP DG +T  A R SAG  Q    LC
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDG-ITELAGRSSAGKTQLALQLC 121


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,068,739
Number of Sequences: 237096
Number of extensions: 2439828
Number of successful extensions: 4972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4972
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)