Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1g13
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   1.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   4.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   4.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   9.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 631 LICLQLFKCLAESCHCFINRFIEVFNDII 545
           L+ L  F+C+A S    +NRF +   D+I
Sbjct: 455 LLFLMFFECIAISWAFGVNRFYDGIRDMI 483


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 631 LICLQLFKCLAESCHCFINRFIEVFNDII 545
           L+ L  F+C+A S    +NRF +   D+I
Sbjct: 508 LLFLMFFECIAISWAFGVNRFYDGIRDMI 536


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 243 ELHINSAPKPNTKYKPVN 190
           ++H    PKP TK KP +
Sbjct: 244 KVHATKPPKPQTKTKPTS 261


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 470 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 354
           R+R +R I +  STR R       ++ +    N +STPR
Sbjct: 230 RARQSR-INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 470 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 354
           R+R +R I +  STR R       ++ +    N +STPR
Sbjct: 230 RARQSR-INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 470 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 354
           R+R +R I +  STR R       ++ +    N +STPR
Sbjct: 230 RARQSR-INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 515 IDDMANTDPMNDIIKDLNESIDKTMTAF 598
           I D+   D +ND I  LN S    +TA+
Sbjct: 116 ISDLFVFDDLNDYINRLNYSAFVNLTAY 143


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 384 PTMKSEKYSTIEKQAYTTQYVSHFVSSSFC 295
           PT+ S+K S I+     T+Y+        C
Sbjct: 281 PTLPSDKLSKIQTLKLATRYIDFLFQVLHC 310


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 606 HLKSCKHIKCLKQGNKIK 659
           HLKS K IKC  +   +K
Sbjct: 113 HLKSSKLIKCFAKYKTLK 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,617
Number of Sequences: 438
Number of extensions: 5104
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)