Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1g02
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 4.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 5.2
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 6.9
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 6.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 6.9
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 24 9.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 24 9.1
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 9.1
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 24 9.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 4.0
Identities = 23/94 (24%), Positives = 44/94 (46%)
Frame = +2
Query: 98 IPTSLTTFWRSXFTXASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTP 277
IP++ ++ + SS T++ + +S + A +S S + ++ T S+P
Sbjct: 569 IPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP 628
Query: 278 IXFGSXAPXTSSGIVSQLSSXLSSPKTRLXLCTS 379
S +SS I+S SS LSS + + + +S
Sbjct: 629 TPSTSSLMISSSSIISGSSSILSSSISTIPISSS 662
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 290 SXAPXTSSGIVSQLSSXLSSP-KTRLXLCTSATVS 391
S P T S + S LSS SSP T L + +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 5.2
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 98 IPTSLTTFWRSXFTXASSSPITTVRLKRA-SIYTRRRRAKSSQMS*TN*YETTR*TAWST 274
+PTS TF S F S P ++ + S SS + T+ T+ + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731
Query: 275 PIXFGSXAPXTSSGIVSQLSSXLSS 349
P+ S P + S S+LSS L+S
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTS 756
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 6 RSWVTHRTRRSKDEARYSYSMSFRGIS 86
R +V RRS D + YSY + +GI+
Sbjct: 355 RLYVPRSHRRSSDRSHYSYVVIQKGIT 381
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 6 RSWVTHRTRRSKDEARYSYSMSFRGIS 86
R +V RRS D + YSY + +GI+
Sbjct: 355 RLYVPRSHRRSSDRSHYSYVVIQKGIT 381
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 24.6 bits (51), Expect = 6.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 157 DYDXAVEKSKHLYEEKKS 210
DY+ E++K LY+E+KS
Sbjct: 193 DYEKIKEENKRLYKERKS 210
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -2
Query: 131 CSSRXSLGTSEXAAYRDATKRHRITIAGFIFGASSPVCYPRT 6
C ++ + RDA K H++T +G + C P+T
Sbjct: 201 CKETLPRSSTTSYSIRDADKHHKLTTSGVTKMNITERCKPKT 242
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 3 VRSWVTHRTRRSKDEARYSYSMSFRGISVCC 95
V SW T+++R++ A Y M IS+ C
Sbjct: 252 VASWETYQSRKAALTANDVYKMQPPNISLAC 282
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 375 VHKXNRVFGEDKXELNWETIPDDV 304
+H EDK +L +ETIPD V
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPV 32
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 24 RTRRSKDEARYSYSMSFRGIS 86
RTR + EAR SY RG++
Sbjct: 491 RTRNLRKEARLSYYTKLRGVN 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,384
Number of Sequences: 5004
Number of extensions: 18128
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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