Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1f15
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0588 + 22567820-22570802,22570917-22571269 29 2.7
06_01_0589 + 4235361-4235433,4236484-4237187,4237584-4237805,423... 29 2.7
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471... 29 3.6
01_05_0074 + 17901185-17901258,17901758-17901845,17902195-179023... 29 3.6
07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550 29 4.8
07_03_0305 - 16475127-16476017,16476058-16478067 29 4.8
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 28 6.3
04_04_0263 + 24030132-24030539,24031575-24031586,24032023-240322... 28 6.3
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 440 VKIFGLDLEICTKVNSESDSLPAL-SLENSSATV--EHSLLQDKSSGTDAH 583
V FGL ICT+ NS+ DSL +L L+ S + E+ + +++S+ D +
Sbjct: 959 VSDFGLARFICTRSNSDQDSLTSLYCLKGSIGYIPPEYGMSEERSTKGDVY 1009
>06_01_0589 +
4235361-4235433,4236484-4237187,4237584-4237805,
4237900-4238559
Length = 552
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = +2
Query: 482 NSESDSLPALSL---ENSSATVEHSLLQDKS----SGTDAHGSSENSRTETFKQPVFITS 640
N+E D A+SL ENS++T EHSLL +S H S + K PV T
Sbjct: 388 NNEHDGFDAVSLQETENSNSTSEHSLLGTRSVQVIQMETEHNHSSAPTFDIVKDPVADTH 447
Query: 641 TM-ENSNNAVDS 673
++ E + A++S
Sbjct: 448 SLPETYSLALES 459
>11_06_0277 +
21843658-21845220,21846533-21846718,21847037-21847165,
21847256-21847415,21847846-21847955,21848038-21848247,
21848473-21848730,21848810-21848885,21849217-21849350,
21849928-21850007,21850265-21850316
Length = 985
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 503 PALSLENSSATVEHSLLQDKSSGTDAHGSSENSRTETFK 619
P L + E ++Q+KS GTD+ + SRTE F+
Sbjct: 634 PGKELHDMDDIYEEYVVQEKSQGTDSDLDHQISRTEEFE 672
>01_05_0074 +
17901185-17901258,17901758-17901845,17902195-17902332,
17902820-17903044,17903176-17903358,17903453-17903697,
17905640-17905685,17905784-17905876
Length = 363
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 591 DEPCASVPLDLSCKRLCSTVAEEFSSDNAGRESLSELTLVH--ISKSKPKILTAILSVES 418
D+P S P D C+ ++ D A R S SEL L H I K + K L + VES
Sbjct: 296 DQPPPSAPADQFSPEFCAFISSCIQKDPAERMSASEL-LNHPFIKKFEDKDLDLRILVES 354
Query: 417 I 415
+
Sbjct: 355 L 355
>07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550
Length = 461
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 467 ICTKVNSESDSLPALSLENSSATVEHSLLQDKSSGTDAHGSS-ENSRTETFKQPVFITST 643
+ T + + ++PA NSS S Q + + +DA + E+SRT S
Sbjct: 276 VSTTESPAAAAVPATPQSNSSGNAVSSAEQKEKAASDAADAEVESSRTVQSSASPAANSP 335
Query: 644 MENSNNAVDSVPLFR 688
S +AVD P+ R
Sbjct: 336 GAMSESAVDKPPVIR 350
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = -3
Query: 603 LEFSDEPCASVPLDLSCKRLCSTVAEEFSSDNAGRESLSELTLVHISKSKPKILTAILSV 424
LEF V +DLSC L + E+ S A + L+ H+S P + A+ S+
Sbjct: 766 LEFRSGIIYMVNIDLSCNNLTGHIPEDISMLTALKN--LNLSWNHLSGVIPTNIGALQSI 823
Query: 423 ESIFL 409
ES+ L
Sbjct: 824 ESLDL 828
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 500 LPALSLENS--SATVEHSLLQDKSSGTDAHGSSENSRTETFKQPVFITSTMENSNNAVDS 673
LP +S+ N+ TVE S+ KSS S +N +P T T + +A DS
Sbjct: 391 LPDISISNNIIGETVESSV-DFKSSAQVMDNSVKNQNNVGDIEPPVDTPTNDMPTDAKDS 449
Query: 674 VPLFRDVRLPE 706
+P+ V + E
Sbjct: 450 IPMVHVVEIEE 460
>04_04_0263 +
24030132-24030539,24031575-24031586,24032023-24032267,
24032380-24032900,24033387-24033877
Length = 558
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = -3
Query: 579 ASVPLDLSCKRLCSTVAEEFSSDNAGRESLSELTLVHISKSKPKILTAILSVESIFLVLD 400
A++PL S +RL + E + L +L L+ + + KP + + L+ +I ++LD
Sbjct: 99 ANLPLRASLERL--GMPESVAGVRVNNPGLLDLPLIDVFQEKPMEVVSALAKNNIMVILD 156
Query: 399 S 397
+
Sbjct: 157 N 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,892
Number of Sequences: 37544
Number of extensions: 299578
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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