Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1f15
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-13|CAA85331.1|  598|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z81589-5|CAB04722.1|  233|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81589-4|CAB04721.1|  256|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>Z36753-13|CAA85331.1|  598|Caenorhabditis elegans Hypothetical
           protein T09A5.2a protein.
          Length = 598

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 225 YNEKLSLNE*QFDSSRDSISTTFYVVLPKPTGD 127
           Y   ++ NE +F  SRDS  +    V P+PTGD
Sbjct: 121 YESDMTSNEDRFALSRDSSCSVPRSVSPQPTGD 153


>Z81589-5|CAB04722.1|  233|Caenorhabditis elegans Hypothetical
           protein T08G5.9 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 332 GNIELSVARTNVTSKHCETAEPESSTRNIDSTDNIAVKIFGLDLEICTKVNSESDSLPAL 511
           G+  LS + T++ S   E A  +   R  +ST+N   +   L   + +   SESD +   
Sbjct: 56  GDESLS-SETSIVSFTGENANKQKRQRLSESTENSIPEPAFLRSNVTSLTTSESDDIQQF 114

Query: 512 SLENSS 529
            LEN S
Sbjct: 115 FLENES 120


>Z81589-4|CAB04721.1|  256|Caenorhabditis elegans Hypothetical
           protein T08G5.8 protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 332 GNIELSVARTNVTSKHCETAEPESSTRNIDSTDNIAVKIFGLDLEICTKVNSESDSLPAL 511
           G+  LS + T++ S   E A  +   R  +ST+N   +   L   + +   SESD +   
Sbjct: 79  GDESLS-SETSIVSFTGENANKQKRQRLSESTENSIPEPAFLRSNVTSLTTSESDDIQQF 137

Query: 512 SLENSS 529
            LEN S
Sbjct: 138 FLENES 143


>U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical
           protein B0222.1 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 485 SESDSLPALSLENSSATVEHSLLQDKSSGTDAHGSSENSRTETFKQPVFITST 643
           S S S  + S  +S ++   S     +SGT ++ S     +  F+Q VF T++
Sbjct: 36  SSSSSFSSSSSRSSGSSFSSSSSSRPTSGTSSYRSGNTQYSSNFRQNVFHTTS 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,667
Number of Sequences: 27780
Number of extensions: 287680
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)