Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1f15
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 453 PKILTAILSVESIFLVLDSGSAVSQCLLVTL 361
           P +  + LSV + +L  DSG  ++ C+ + L
Sbjct: 245 PCVSISYLSVLAFYLPADSGEKIALCINILL 275


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +2

Query: 377 HCETAEPESSTRNIDSTDNIAVKIFGLDLEICTKVNSESDSLPALSLENSSATVEHSLLQ 556
           HC T E      N+ +T N         +   +       SLPA S   +S TVE  ++ 
Sbjct: 822 HCVTTEQSVVVTNVTTTINTPTT----SVISMSGTTVPITSLPASSTSINSITVEKDVIN 877

Query: 557 D 559
           D
Sbjct: 878 D 878


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 422 STDNIAVKIFGLDLEICTKVNSE 490
           +TD I    FG+D+   T  NSE
Sbjct: 182 TTDVIGSCAFGIDMSSMTNENSE 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,034
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)