Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1f10
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 225 7e-60
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 130 2e-31
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 128 1e-30
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 121 1e-28
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 120 3e-28
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 112 6e-26
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 105 5e-24
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.39
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 28 1.6
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 2.1
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 27 2.1
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 3.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 6.3
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.3
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 6.3
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 6.3
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 225 bits (549), Expect = 7e-60
Identities = 104/204 (50%), Positives = 144/204 (70%)
Frame = +1
Query: 112 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYE 291
MSSIGTGYDL FSPDGR+FQ EYA KAVEN+ T IG++ +DGV+ A+EK++TSKL +
Sbjct: 1 MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLK 59
Query: 292 PGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYM 471
P N RI +D H+G+A G I D + IV+ AR EA+++R YGSP+P + +R+ Y+
Sbjct: 60 PRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYV 119
Query: 472 HAYTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKL 651
+T YS+VRP+G + T+ D EGP +YM++P+GV + Y G A GK +Q A+ E+EKL
Sbjct: 120 QLFTCYSSVRPFGVMSFVATY-DSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKL 178
Query: 652 KLGDLTVKELVREAARIIYLVHDE 723
L +K+ V+EAARI+Y HDE
Sbjct: 179 NFSSLKMKDAVKEAARILYATHDE 202
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 130 bits (314), Expect = 2e-31
Identities = 71/203 (34%), Positives = 114/203 (56%), Gaps = 6/203 (2%)
Frame = +1
Query: 133 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 312
YD + FSP+GR+FQVEYA +A++ T IG++ KD VV VEK +TS L E + +++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKL 67
Query: 313 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAY---- 480
F ID H+G A++GL +DAR I+E AR + N+R Y P ++ + + +
Sbjct: 68 FEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGE 127
Query: 481 --TLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLK 654
RP+G ++++ D GPQ+Y +PSG F Y A+G + AK+E+ K
Sbjct: 128 DGEERIMSRPFGVALLI-AGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEF 186
Query: 655 LGDLTVKELVREAARIIYLVHDE 723
D+T++E +++ V +E
Sbjct: 187 HKDMTLEEAEVLILKVLRQVMEE 209
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 128 bits (308), Expect = 1e-30
Identities = 66/175 (37%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
Frame = +1
Query: 127 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANK 306
+GYD + S FSPDGR+ QVEY +AV T I LRG + +V VE+ KL +
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61
Query: 307 RIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTL 486
+I +D HV +A AGL +DAR +++ AR EA N++ PV ++YL V+ YT
Sbjct: 62 KIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQ 121
Query: 487 YSAVRPYGCS-VVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 648
VRP+G S ++ G P++Y +P+G+ ++ A+G+A +AA+ +EK
Sbjct: 122 SGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEK 176
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 121 bits (291), Expect = 1e-28
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 1/192 (0%)
Frame = +1
Query: 133 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KR 309
YD + FSP+GR++QVEYA +A+ ++G +G+ KDG+V A EK +TSKL E + ++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEK 64
Query: 310 IFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLY 489
++HI +++ AVAGL +DA ++ AR Y + +P + L RV YT Y
Sbjct: 65 LYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQY 124
Query: 490 SAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLKLGDLT 669
+RP+G S + W G Q++ +PSG S+ ++G + ++ + + D+
Sbjct: 125 GGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDIN 184
Query: 670 VKELVREAARII 705
+ E A + +
Sbjct: 185 LDEASAMAVKFL 196
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 120 bits (288), Expect = 3e-28
Identities = 66/188 (35%), Positives = 105/188 (55%), Gaps = 1/188 (0%)
Frame = +1
Query: 133 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 312
Y S + FSP+G++ Q+EYA AV T +G++ DGVV A EK TS+L + +++
Sbjct: 5 YAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKV 64
Query: 313 FHIDEHVGMAVAGLISDARQIVETARSEA-SNYRSQYGSPVPLKYLNERVSMYMHAYTLY 489
I +GM +G+ D R +V+ +R A + Y+ Y P K L + ++ M T
Sbjct: 65 CAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQS 124
Query: 490 SAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKLKLGDLT 669
VRP+G S+++ D +GP +Y +DPSG F++ A+GK+ AAKT +EK +L
Sbjct: 125 GGVRPFGVSLLV-AGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELE 183
Query: 670 VKELVREA 693
+ + V A
Sbjct: 184 LDDAVHTA 191
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 112 bits (269), Expect = 6e-26
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = +1
Query: 130 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGANK 306
G+D + + FSP+GR++QVEYA KA N+G T +G+ GK+ +K + KL + K
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 307 RIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTL 486
+F I + +G + G I+DAR V ARSEA+ + + G P+P L +R++ T
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQ 125
Query: 487 YSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 648
+A+RP G ++ + D GP ++ LDP+G Y + G + +EK
Sbjct: 126 RAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEK 179
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 105 bits (253), Expect = 5e-24
Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 3/194 (1%)
Frame = +1
Query: 133 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 312
YD A+ +SP GR+ QVEYA +A++ +GL K V K +L K++
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQKKL 63
Query: 313 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 492
ID+H+G+A+AGL DAR + + EA + ++ + P+P++ L +V+ T
Sbjct: 64 IRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEY 123
Query: 493 AVRPYGCS-VVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKL--KLGD 663
RPYG +V+G D GP + PSG+ Y G ++G Q+A+T IE+ D
Sbjct: 124 GRRPYGVGFLVIG--YDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPD 181
Query: 664 LTVKELVREAARII 705
+ +EL+ A R +
Sbjct: 182 SSREELILSALRAL 195
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.39
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = -2
Query: 380 STICLASDMSPATAMPTCSSIWNILLFAPGSYSLDVINFSTANTTPSFPRRPITVPEFST 201
+T C S P T+ P SS + I P + + T +T+ + PIT P ++
Sbjct: 552 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTS 611
Query: 200 AFAAYSTWKT 171
+ + +W +
Sbjct: 612 SSSTQVSWNS 621
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 267 LLNSKYHSVFSSEANYCSRIFYSLCSIFHLENAT 166
LL +KY V+SS N C +++ ++F +T
Sbjct: 488 LLRNKYPKVYSSTPNLCDQVWLDRTNLFPCNRST 521
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 322 DEHVG-MAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAV 498
D H+G + + + ++ V T+ + + +YG+PVP+K++ + MH+ A+
Sbjct: 393 DHHLGGINSITFLENGKRFVTTSDDSSMRFW-EYGTPVPIKFV---ADIAMHSMPRV-AL 447
Query: 499 RPYGCSV 519
RP G S+
Sbjct: 448 RPNGKSI 454
>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +1
Query: 97 KQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVF 255
KQC + S TG + G F V+Y KA +G + + VF
Sbjct: 32 KQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPSQKTVALGKKRRQADVF 84
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 374 ICLASDMSPATAMPTCSSIWNI--LLFAPGSYSLDVINFSTANTTPSFPRR 228
I L++ + + P C +++ L + PGSY L I+ N PR+
Sbjct: 455 IALSTKLYTGSIFPKCEKDFDLHFLAYKPGSYDLSSISIEDVNHVVHKPRK 505
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 239 KTEWYLLLRS*SHPNCMNLAQTRGYSILMN 328
+ E++LL + SHPN N A Y +L+N
Sbjct: 64 ENEYFLLRQLSSHPNGRNYAIAPAYILLLN 93
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 238 KDGVVFAVEKLITSKLYEPGANKRIFHIDEHVGMAVAGLISDAR 369
K G+V +V++ I + YE + +FHI E++ ++++ LI R
Sbjct: 207 KSGLVNSVDRCI--QFYEKSISLPMFHIAENLAISLSCLIISFR 248
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 85 SKYIKQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTV 222
S ++ + + + +G G +S +G V + KAVENS +
Sbjct: 196 SSFVSRAASPAMVGPGVPFYSSITGANGNVLAPSGSLKAVENSDVI 241
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 606 SRKSQTGSKNRDRKAKTWRPHSE 674
S +TG+K R +K+ +W+P ++
Sbjct: 493 SNDEKTGNKKRKKKSVSWKPDND 515
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 532 WTDYEGPQMYMLDPSGVSF-SYFGCAVGKAKQAAKTEIEKLKLGDLTVKELVREAAR 699
WT + + PS F S F C V K + + + G + VKE +R+ +R
Sbjct: 317 WTSQGELPVEIFLPSSYHFHSVFTCPVSKEQATEENPPMMMSCGHVIVKESLRQLSR 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,411
Number of Sequences: 5004
Number of extensions: 66049
Number of successful extensions: 213
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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