Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1f09
         (105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   1.0  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    23   5.3  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    23   5.3  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    23   7.1  
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    23   7.1  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 76  YFIFQIIFHCYSFWL 32
           YFI  +IF  YSFW+
Sbjct: 492 YFISALIFTSYSFWI 506


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 100  FLKNTKNLYFIFQIIFHCYSFWL 32
            F  N   LYF+  ++F+C S ++
Sbjct: 1008 FAINNSLLYFVRALLFYCSSIFI 1030


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 10  YFKYSRNPTRMSSNEILFG 66
           YF +SR+P R S N  + G
Sbjct: 164 YFPFSRSPGRHSGNSTING 182


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 89  YQKSVFYFPNNISLLLILVGFREYL 15
           +Q S FY  + + LLL+   ++E L
Sbjct: 501 FQPSAFYINSMVGLLLLTKNYQERL 525


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 91  NTKNLYFIFQIIFHCYSFW 35
           NT+NL F   I+FH    W
Sbjct: 147 NTENLAFPNGILFHLADIW 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,203
Number of Sequences: 5004
Number of extensions: 5225
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 16
effective length of database: 2,282,414
effective search space used: 41083452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)