Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1f09
         (105 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   4.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    18   9.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    18   9.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    18   9.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    18   9.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    18   9.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 67  FQIIFHCY 44
           FQ  FHCY
Sbjct: 423 FQQFFHCY 430


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -3

Query: 49  CYSFWLGFV 23
           CY  W+ FV
Sbjct: 219 CYGIWVYFV 227


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 61  IIFHCYSFWLG 29
           ++   +SFWLG
Sbjct: 214 VMLSWFSFWLG 224


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 40 FWLGFVN 20
          FWLG+ N
Sbjct: 48 FWLGYCN 54


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 40  FWLGFVN 20
           FWLG+ N
Sbjct: 496 FWLGYCN 502


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -3

Query: 49  CYSFWLGFV 23
           CY  W+ FV
Sbjct: 95  CYGIWVYFV 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,739
Number of Sequences: 438
Number of extensions: 500
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 15
effective length of database: 139,773
effective search space used:  2655687
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)