Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1f08
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    94   5e-21
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   4.2  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    24   7.3  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    24   7.3  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    23   9.6  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    23   9.6  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 94.3 bits (224), Expect = 5e-21
 Identities = 42/94 (44%), Positives = 58/94 (61%)
 Frame = +3

Query: 3   DSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGR 182
           DSY++P  +++    R L+VD               T+ DVIHS  +PSLGIK D  P R
Sbjct: 140 DSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSR 199

Query: 183 LNQTNFFINRPGIFFGQCSEICGANHSFIPIVIE 284
           LNQ +  I+R G+F+GQCSE+CG  HS +PIV++
Sbjct: 200 LNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQ 233


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 69  DYLHLIVGIHYFLFHWMGLY 10
           D+  L++GIH F +H   LY
Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 100 RIWLFIGKIIRLSTSNSRNSLFFISLDGII 11
           ++W+   +I  +S +NSR ++  +  DG++
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLV 50


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 124 TSVAVIIIRIWLFIGKIIRLSTSNSRNSLFFISLDGIIYES 2
           TS++   + I    G I+RL    S N + F SL   I E+
Sbjct: 822 TSISNTRLAIQTPTGNIVRLREERSGNGVIFFSLSLTINET 862


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 100 RIWLFIGKIIRLSTSNSRNSLFFISLDGII 11
           ++W+   +I  +S +NSR ++  +  DG++
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLV 50


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 236 FRNLWS*S*FYTYCN*KYFNQKL 304
           F N+W  S  YTYC    FN+ L
Sbjct: 200 FSNIWVYSNNYTYCKYWPFNEIL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,238,597
Number of Sequences: 5004
Number of extensions: 21619
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)