Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1f07
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.6  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    25   8.6  

>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 103 FAVILVILSTLTQEVEARRKILRGRRVMTRTYYRKFIFNILAGNQINSLNSVSYRIF 273
           +A I+  +S L     +R   ++    +   Y   F+F I+A   I+ LN +S +IF
Sbjct: 101 WAFIIDAISLLVARCFSRANPIKCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIF 157


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 380 VLTEQSFYNKFQPHILR 430
           +L+ Q   NKFQPH+L+
Sbjct: 95  LLSSQHISNKFQPHLLK 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,771
Number of Sequences: 5004
Number of extensions: 54400
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)