Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1f07
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910...    29   2.9  
06_01_1088 - 8926361-8927301,8927437-8927705,8927850-8929023,892...    28   6.8  

>04_03_0562 +
           17190443-17190520,17190715-17190853,17190943-17191034,
           17191681-17191989,17192817-17193506
          Length = 435

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 444 PLSN*SEEVIRLARAYRDE*KVLSSVIIKPKNWAIDDADG 563
           P++N S E++ +  A R E KV   V+ K   W +++ADG
Sbjct: 72  PVNNVSGEIVEVGSAVR-EFKVGDKVVSKLDFWMVEEADG 110


>06_01_1088 -
           8926361-8927301,8927437-8927705,8927850-8929023,
           8929132-8929399
          Length = 883

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 325 RYLSSTYRAGSQKRPTIRRYGNLRNLTNLSDF 230
           RYL  +Y   S K   I R GNL  L NL  F
Sbjct: 563 RYLDISYSGCSPKLSEISRLGNLSRLRNLQYF 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,747,017
Number of Sequences: 37544
Number of extensions: 300477
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)