Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1f06
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 273 2e-74
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 30 0.43
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 4.0
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.3
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 26 7.0
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 26 7.0
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 273 bits (670), Expect = 2e-74
Identities = 132/227 (58%), Positives = 167/227 (73%)
Frame = +1
Query: 97 MKGCIFNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPS 276
M FN ++GY+E L RG++ +L+Q Y NL QCE+LED +L L TDYG FLAN+ S
Sbjct: 1 MDALSFNTNSGYIEALVRGYESALLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQ-S 59
Query: 277 PLSVSTIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPIS 456
L+ S I K EKL+ EF +R + E LS F+D+ITY+YMIDNI+LL+TGT++ +
Sbjct: 60 KLTSSIISAKATEKLLDEFDLIRRQADETLSKFMDYITYAYMIDNIMLLLTGTVNGQDTH 119
Query: 457 ELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRN 636
+L+ +CHPLG FE + A+ VA ELY+ VL++TPLAP+F DC+S DLDE +IEIIRN
Sbjct: 120 DLLERCHPLGWFETLPALCVATNVEELYSVVLIETPLAPYFKDCLSADDLDEQHIEIIRN 179
Query: 637 TLYKAYLEAFYDFCKQIGGTTADVMCEILAFEADRRAIIITINSFGT 777
TLYKAYLE FY+FCK+IG TAD M IL FEADRRAI ITINSFGT
Sbjct: 180 TLYKAYLEDFYNFCKKIGACTADTMLPILEFEADRRAITITINSFGT 226
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 29.9 bits (64), Expect = 0.43
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 639 SVPDNLNIHFIQVLFANAIHKEWRQWCVHQHSIVKF 532
SV D LN +F LF + +K W W + +V +
Sbjct: 1628 SVRDILNCYFYATLFDKSWYKAWHSWALANFEVVGY 1663
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 4.0
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Frame = +1
Query: 247 YGTFLANEPSPLSVSTIDDKLREKLVIE-FQHLRNHSVEPL---STFLDFITYSYMIDNI 414
+G L + SP++ S DD++ LV + F+ SV L ++T Y +I
Sbjct: 1581 FGRLLPSLDSPVTKSITDDRVEPLLVKDTFREFAEASVSGLLSCDESFHYLTQLYYTADI 1640
Query: 415 ILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAA---TPAELYNAVLVD-TPLAPFFV 582
+ + L QR + L+ KC FE + + +++ ++ VD L F
Sbjct: 1641 VRNLWILLSQR--NSLL-KCMESVEFEAFDYEQLKGFEHLVIQIWKSLRVDGAGLINF-- 1695
Query: 583 DCISEQDLDEMNIEIIRNTLYKAYLEAF 666
DC +E DL+ ++ TLYK LE F
Sbjct: 1696 DCCTEDDLNNPHLLF---TLYK-LLERF 1719
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 508 IHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFC 678
I+ + + L N L T PF S Q+ ++ +++RN L+K +F+ C
Sbjct: 178 INPTTSKSPLLNKKLSSTSQEPFRTSRRSGQESGDVTTKMLRNLLHKRLWISFFFAC 234
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 5.3
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Frame = +1
Query: 319 LVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILL--ITGTLHQRPISELIPKCHPLGSF 492
L +E LR VE ++ + I N L ++ Q P S+L+ PL SF
Sbjct: 835 LYVESLQLRKLWVEKINVAKKRHSQKINIKNPFALKVVSDVAFQYPPSDLVNGNEPLNSF 894
Query: 493 EQM---------EAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLY 645
++ A++ A + + L+ P+A + CI++ + E ++ ++ T
Sbjct: 895 NEITLVEGSSIDRALNEVAWKHPIVSEELLPEPIAYGDISCIAQFNDYEGHVSVLIATST 954
Query: 646 KAYLEAFYD 672
+L AF D
Sbjct: 955 GIFLGAFGD 963
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 7.0
Identities = 23/92 (25%), Positives = 38/92 (41%)
Frame = +1
Query: 454 SELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIR 633
S++IP LG F + H T ++ L + PF + I+E L N +R
Sbjct: 342 SQIIPVEAALGFFPDITPEHPLPTDKNIFTYSLKTSSFVPFAGNLITELFLCSDNKYYVR 401
Query: 634 NTLYKAYLEAFYDFCKQIGGTTADVMCEILAF 729
+ L + D C +D +CE+ A+
Sbjct: 402 H-LVNQQVYPLTD-CGYGPSGASDGLCELSAY 431
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 247 YGTFLANEPSPLSVSTIDDKLREKLVIE 330
Y T++AN+ S +T+D LR L ++
Sbjct: 374 YSTWIANKHKTASSATVDSPLRRSLSVD 401
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,702
Number of Sequences: 5004
Number of extensions: 71078
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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