Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1f01
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 124 SAEVADNSVDPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLYSRQ 270
           ++ + DN    P +    N+G A  NN   +++GA   D    S  S +
Sbjct: 233 NSPLEDNIKCEPLELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNE 281



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 291 VVAQHVELARVQTLVDFIFH 232
           +V Q V  + +  LV+FI+H
Sbjct: 71  IVLQDVAFSDLHALVEFIYH 90


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 321 DIRTRHSTHSVVAQHVELARVQTLVD 244
           D RTRH +  VVA   E   +  ++D
Sbjct: 338 DRRTRHLSDRVVALEAEKKNLSKVID 363


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 193 ALLLYLVSAFSPGGQ 149
           AL+LYL+  FSP G+
Sbjct: 580 ALVLYLLDRFSPFGR 594


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 676 LFSQVFCDFGPEFTVLDVNGEN 741
           L S  F D+ P+FT + ++GE+
Sbjct: 226 LTSNTF-DYDPKFTKMTIDGES 246


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +1

Query: 79   QPKFWQNCARSCPMSSAEVADNSVDPPAKKRKLNT 183
            + +FW+    + P +     ++   P   KR +NT
Sbjct: 1193 EKRFWERLRYAIPSAGDISIESKSSPLVYKRNINT 1227


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 676 LFSQVFCDFGPEFTVLDVNGEN 741
           L S  F D+ P+FT + ++GE+
Sbjct: 226 LTSNTF-DYDPKFTKMTIDGES 246


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 676 LFSQVFCDFGPEFTVLDVNGEN 741
           L S  F D+ P+FT + ++GE+
Sbjct: 226 LTSNTF-DYDPKFTKMTIDGES 246


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 450 FRDCNWSEQGF 482
           F +C WS +GF
Sbjct: 152 FPECKWSRKGF 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,688
Number of Sequences: 438
Number of extensions: 4666
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)