Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e23
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0471 - 14455543-14455650,14455925-14456002,14456121-144562...    28   9.5  

>05_03_0471 -
           14455543-14455650,14455925-14456002,14456121-14456285,
           14457151-14457261,14457863-14458024,14458462-14458538,
           14459526-14460177
          Length = 450

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 172 LLSLCACHRFLISGNYVKVVVASL 243
           L+ LC+CH  +ISG +V + +A++
Sbjct: 205 LILLCSCHCVIISGFFVTIWIAAV 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,070
Number of Sequences: 37544
Number of extensions: 282471
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)