Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e19
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.016
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   0.78 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   4.2  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    26   4.2  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   5.5  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   9.7  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 184 LILTAATCWLFWLCAYMAQMNPLIGP 261
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 65  SKWATPLSRSSFSPSFGVWLVLFAPSSHLKDQ 160
           S+W  P+++       GVW ++ AP SHL+D+
Sbjct: 47  SRWRAPVNKD-----LGVWDLVEAPGSHLRDE 73


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 103 SILWGVVGIICPIFAPKGPNRGIIQV 180
           ++LWG++ +I  +F P+ P R +IQV
Sbjct: 189 NLLWGIITMIGILFLPESP-RYLIQV 213


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 568 CRGTVISNFDCSIIFFSLLRFTNRASLI 651
           C G V++ F    I F++L+FT+ AS +
Sbjct: 11  CCGAVVTAFSVIGIVFTILKFTSFASFV 38


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 56  NNISKWAT--PLSRSSFSPSFGVWLVLFAPSSHLKDQTEGL 172
           +N+ K A   PLS+ S SPS+  + V     S L+  ++GL
Sbjct: 41  DNVDKPANSIPLSKRSTSPSYAPYTVACPSGSLLRPASDGL 81


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 544 FVAIFYNLCRGTVISNFDCSIIFFS 618
           FV     +C+ T+ ++  C IIFFS
Sbjct: 436 FVNRIQRVCKHTIFASNPCRIIFFS 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,206
Number of Sequences: 5004
Number of extensions: 55523
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)