Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e13
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...   140   3e-34
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    31   0.18 
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    28   1.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.2  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    27   3.8  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   8.8  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    25   8.8  

>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score =  140 bits (338), Expect = 3e-34
 Identities = 70/199 (35%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = +2

Query: 146 GYHVLRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPIKMLIYSSK 325
           G+ VL+V+  S    A +E+++DFI A+    L+ D      LL+++  + + + ++S K
Sbjct: 28  GFRVLKVENDSKAYNARIESYYDFITAVNGILLNGDPSMFMALLRDSSPE-VTLEVFSLK 86

Query: 326 TQSVREVMITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDY 505
            Q  R+V I  +++      +G+ +++ S   A + +WH+L V   SP   A L P+ DY
Sbjct: 87  GQITRKVNIKINSD----EKIGMVLQWASIAPAVDAIWHILNVIDDSPVARASLVPYEDY 142

Query: 506 IIGS-DSILHESEDLFTLIEAHEGRALKLYVYNANDDTCREVLITPNHNWGGDGSLGCGI 682
           I+G+ + ++   + L  LIE+H  R L+LY+YN   D+ R+V I PN +WGG+G++GCG+
Sbjct: 143 IVGTPEGMMTGEKALSDLIESHLNRPLRLYIYNHYRDSTRQVTIVPNRHWGGNGAIGCGV 202

Query: 683 GYGYLHRIPIRHSPPTNSP 739
           G+G LHR+P   S P   P
Sbjct: 203 GHGVLHRLPAPLSGPPPQP 221


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +2

Query: 464 SPAELAGLRPFSDYIIGSDSILHESEDLFTLIEAHEGRALKLYV---YNANDDT-CREVL 631
           SPA+ AGL    D ++   ++   SE L T I  +  + L + +   Y+A+  T   E+ 
Sbjct: 139 SPAQEAGLC-IGDELVHVQNVTSLSE-LPTFISNNVNKTLDVLLIRGYSADGSTNLVELK 196

Query: 632 ITPNHNWGGDGSLGC 676
           +TP H W G G LGC
Sbjct: 197 LTP-HKWQGPGLLGC 210


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +2

Query: 518 DSILHESEDLFTLI--EAHEGRAL--KLYVYNANDDTCREVLITPN 643
           DS++H SED  TL+    H G  +  ++ V+N  D   R+V+ + N
Sbjct: 258 DSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTN 303


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 684 PMPHPKLPSPPQLWFGVMRTSRHVSSFA 601
           PMP PK+P PP     V  TS   SSFA
Sbjct: 196 PMP-PKVPPPPLSQAPVANTSSRPSSFA 222


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 542 DLFTLIEAHEGRALKLYVYNANDDTCREVLIT 637
           DL  L++A + +A+ LY+ +   + CRE++ T
Sbjct: 166 DLLGLLDAADYKAIALYITHVYLEVCRELVQT 197


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 179 VNPLEPVKHDIPQFHLQELQCCVRSPLRSVYHLVIIRGMFGYSYTGLK 36
           + P  PV+ +    HL ++QCC ++ LR    L + +     +++ L+
Sbjct: 112 LEPKTPVQTNTNNNHLDDIQCCAKN-LRLRLELAMYKVQVNQTFSPLQ 158


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 185 QKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPIKM 307
           ++AN+E   D + A E     +D       L+N  +KP+K+
Sbjct: 78  KEANVEGLRDALFAGEHINFTEDRAVFHPALRNVSEKPMKV 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,399
Number of Sequences: 5004
Number of extensions: 65128
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)