Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1e13
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 33 0.32
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782... 31 0.74
12_02_1252 - 27346314-27347327 31 1.3
03_02_0131 - 5796564-5796605,5797188-5797421,5798415-5798717,579... 31 1.3
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737... 28 9.2
08_02_0752 - 20795447-20795502,20795673-20795893,20795998-207960... 28 9.2
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 28 9.2
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 32.7 bits (71), Expect = 0.32
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +2
Query: 131 GGGTEGYHVLRVQEGSPGQKANLEAFFDFILAIETT---RLDQDNDTLKELLKNNVDKPI 301
GGG +G EG P + A+LE F+ +A+E LD+ DTL+EL K K I
Sbjct: 83 GGGGDGV----AGEGEPEEAASLERRFEEAIAVEGCMHGELDKVYDTLRELEKAEGVK-I 137
Query: 302 KMLIYSSKTQSVR 340
+L+ Q+VR
Sbjct: 138 DLLLCCGDFQAVR 150
>11_02_0056 +
7828453-7828717,7829425-7829427,7829658-7829912,
7829997-7830124,7831063-7831207,7832178-7832275,
7833253-7833395,7835119-7835239,7835492-7835584,
7835712-7835828
Length = 455
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 452 VHPSSPAELAGLRPFSDYIIGSDSILHES-EDLFTLIEAHEGRALKLYVYNANDDT 616
V P SPAE AG RP D ++ D L ES +++ ++ G K+ V AN+ T
Sbjct: 387 VTPGSPAEHAGFRP-GDVVVEFDGKLVESIKEIIDIMGDKVGVPFKVLVKRANNVT 441
>12_02_1252 - 27346314-27347327
Length = 337
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -1
Query: 687 YPMPHPKLPSPPQLWFGVMRTSRHV------SSFALYTYNFRALPS*ASMRVNKS 541
YP PH SP W+ V S H+ S+FA YT ++ L + RVN+S
Sbjct: 117 YPTPHLASASPEPYWYSVKLASVHIIVLSSYSAFAKYTPQWKWLEAELG-RVNRS 170
>03_02_0131 -
5796564-5796605,5797188-5797421,5798415-5798717,
5799260-5799847,5800594-5800749,5800861-5800919,
5801935-5802262
Length = 569
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = +2
Query: 170 EGSPGQKANLEAFFDFILAIETTRLDQDNDTLK-ELLKNNVDKPIKMLIYSSKTQSVREV 346
E SP K E+F DF+L ++ + D ++ + N+DK +K L + +
Sbjct: 145 EESPDDKRIPESFRDFLLEMKDSHYDARTFAVRLKATMENMDKEVKKLRLAEQLYKHYAA 204
Query: 347 MITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYIIGSDSI 526
P +G+ +S+R +N + ++ P L F YI+ SD+I
Sbjct: 205 TAIP------KGIHCLSLRLTDEYSSNAHARK--QLPPPELLPLLSDNSFQHYILASDNI 256
Query: 527 LHES 538
L S
Sbjct: 257 LAAS 260
>10_04_0002 -
7372425-7372601,7372697-7372780,7372859-7373010,
7373229-7373324,7373406-7373554,7373723-7373788,
7373925-7373994,7374106-7374236,7376464-7376471,
7377946-7378002
Length = 329
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 401 RFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYI 508
R F A+E + +L+V P E GLRPFSD+I
Sbjct: 131 RTAEFSSADEVINSLLDVRP----EKWGLRPFSDWI 162
>08_02_0752 -
20795447-20795502,20795673-20795893,20795998-20796083,
20796315-20796405,20796499-20796584,20796705-20796807,
20796888-20796985,20797771-20797950
Length = 306
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 608 DDTCREVLITPNHNWGGDGSLGCGIGYGYLHRIPIRHSPP 727
+ T R + H+W G C G R+P+RH PP
Sbjct: 5 EKTTRAGSESSGHHWAG---YSCSAGEASSPRLPLRHRPP 41
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 176 SPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPI-KMLIYSSKTQS 334
SPGQ + + D + + T + LKELL+++V++ + K L+ S KT++
Sbjct: 162 SPGQPSLISDDTDVVALVGTKKDLAKQINLKELLEDSVEERMEKTLLESDKTEA 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,201,550
Number of Sequences: 37544
Number of extensions: 429299
Number of successful extensions: 1476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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