Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e13
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...   303   6e-83
U28928-14|AAL16319.1|  197|Caenorhabditis elegans Hypothetical p...    31   1.2  
AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...    29   4.7  
AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical...    29   4.7  
AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical...    28   6.2  

>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score =  303 bits (745), Expect = 6e-83
 Identities = 129/204 (63%), Positives = 169/204 (82%)
 Frame = +2

Query: 101 MGSSHSTEVPGGGTEGYHVLRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLK 280
           MGSS S  +PGGGTEGYHVLRVQE SPG  A LE FFDFI++I   RLD+DNDT+KE+LK
Sbjct: 1   MGSSESVPIPGGGTEGYHVLRVQENSPGAVAGLEPFFDFIVSIGNIRLDKDNDTMKEVLK 60

Query: 281 NNVDKPIKMLIYSSKTQSVREVMITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHP 460
            +++KP+++ +Y+SK+Q+VR+  I PS NWGGQGLLGVSIRFCSF+GA+++VWH++ V P
Sbjct: 61  QHIEKPLEITVYNSKSQAVRQTSIVPSQNWGGQGLLGVSIRFCSFDGASQHVWHIISVQP 120

Query: 461 SSPAELAGLRPFSDYIIGSDSILHESEDLFTLIEAHEGRALKLYVYNANDDTCREVLITP 640
           +SPA LAGL   +DYI+G++S+LH+++DL  L++A+EG+ LKLYVYN + D  REV +TP
Sbjct: 121 NSPASLAGLIADTDYILGAESVLHQADDLIALVQANEGKPLKLYVYNVDTDVVREVSLTP 180

Query: 641 NHNWGGDGSLGCGIGYGYLHRIPI 712
           N  WGG+G LGC IGYGYLHRIP+
Sbjct: 181 NSAWGGEGCLGCDIGYGYLHRIPV 204


>U28928-14|AAL16319.1|  197|Caenorhabditis elegans Hypothetical
           protein C44B7.1 protein.
          Length = 197

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +2

Query: 422 ANENVWHVLEVHPSSPAELAGLRPFSDYIIGSDSILH----ESEDLFTLIEAHEGRALKL 589
           +NE    +  V   SPA++ G R   D II   ++ H    + +++  + +  E + +++
Sbjct: 103 SNEPFVKISSVVELSPADIGGFRK-DDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRV 161

Query: 590 YVYNANDDTCREVLITPNHNWGGDGSLGCGI 682
            V   N     E  I P   W G G LGC I
Sbjct: 162 TVIRENRPVRLE--ICPK-KWSGPGLLGCNI 189


>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
            protein R02D3.1 protein.
          Length = 934

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/80 (22%), Positives = 39/80 (48%)
 Frame = +2

Query: 122  EVPGGGTEGYHVLRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPI 301
            ++PGG +E + +  VQ G+P   + +     +  AI  + +  +N    E+ +  + +PI
Sbjct: 854  QLPGGNSERHRISLVQYGNPNGFSAMARTVGYTTAI-VSHMVLNN----EIQRAGIQRPI 908

Query: 302  KMLIYSSKTQSVREVMITPS 361
               +Y    + +R+  I P+
Sbjct: 909  LKEVYRPALKRLRDFGIVPT 928


>AC006696-10|AAF39990.1|  228|Caenorhabditis elegans Hypothetical
           protein W08E12.1 protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 626 PHDMYHHLHYIHTT 585
           PHD YHH HY H++
Sbjct: 23  PHDHYHHHHYPHSS 36


>AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical
            protein W02D3.10a protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
 Frame = +2

Query: 233  TTRLDQDNDTLKELLKNNVDKPIKMLIYSSKT-QSVREVMITPSANWGGQ---GLLGVSI 400
            TT+ ++D +  KE  K  +D     ++ S+KT  S+   +I P+ N G       + V  
Sbjct: 841  TTKKEKDKEKEKEE-KITIDSSQSEILTSAKTLSSIMTKLIKPAENDGNSTANATINVRP 899

Query: 401  RFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYIIGSDSILHESEDLFTL 556
               +       VW V      S A +   RP    + G+ S++  S+ L  L
Sbjct: 900  EIVADVQMELLVWVVGRAKVLSSALVKEYRPLHSILSGTSSLISLSKSLIDL 951


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,186,000
Number of Sequences: 27780
Number of extensions: 365914
Number of successful extensions: 1046
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)