Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e13
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.4  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 254 NDTLKELLKNNVDKPIKMLIYSSKTQSVREVMITPSANWGGQGLLGVSIRFCSFEG 421
           ++T  E +K  V   IK + Y+        V   P + W G  +L VS +   F+G
Sbjct: 90  SETRFEEIKKEVSSYIKKIGYNPAA-----VAFVPISGWHGDNMLEVSSKMPWFKG 140


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 254 NDTLKELLKNNVDKPIKMLIYSSKTQSVREVMITPSANWGGQGLLGVSIRFCSFEG 421
           ++T  E +K  V   IK + Y+        V   P + W G  +L VS +   F+G
Sbjct: 106 SETRFEEIKKEVSSYIKKIGYNPAA-----VAFVPISGWHGDNMLEVSSKMPWFKG 156


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 254 NDTLKELLKNNVDKPIKMLIYSSKTQSVREVMITPSANWGGQGLLGVSIRFCSFEG 421
           ++T  E +K  V   IK + Y+        V   P + W G  +L VS +   F+G
Sbjct: 163 SETRFEEIKKEVSSYIKKIGYNPAA-----VAFVPISGWHGDNMLEVSSKMPWFKG 213


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 684 PMPHPKLPSPPQLWFGVMRTSRHVSSFALYTYNFR 580
           P+  P +  P   W G + ++ +   +A Y+ +FR
Sbjct: 333 PVEPPDILMPALTWLGWINSAINPFIYAFYSADFR 367


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 84  LSYYTRDVWI*LYWPQV 34
           LSY+T+D+ +  Y+ QV
Sbjct: 209 LSYFTQDIGLAAYYAQV 225


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +2

Query: 488 RPFSDYII------GSDSILHESEDLFTLIEAHEGRALKLYVYNANDD 613
           RP  DY +      G D  + ES +L  L+E  +GR     ++  +DD
Sbjct: 19  RPGGDYSLDEIEWDGGDYEVVESRELTNLVEIFDGRGT---IFEGHDD 63


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 654  PQLWFGVMRTSRHVSSFALYTYNFRAL 574
            P  W+ +  T+ + + FA+  Y F  L
Sbjct: 1526 PATWYHLRVTAHNNAGFAVAEYEFATL 1552


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 389 GVSIRFCSFEGANENVWHV 445
           G  ++FC F  AN   W V
Sbjct: 492 GTKMQFCIFRTANGRGWGV 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,184
Number of Sequences: 438
Number of extensions: 4682
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)