Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e12
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    31   0.14 
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    31   0.24 
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    29   0.72 
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   2.9  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   2.9  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    26   6.7  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   6.7  

>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 27/101 (26%), Positives = 46/101 (45%)
 Frame = +2

Query: 221 NLNEEKNPDAEIVASGVIVGYLIYTLVQIVTFLFGTTEHKRALSEIVMNFVGVFLWIAVG 400
           NL   K+  ++++A   ++GYL YT   +   L G   ++  +S   M FVG+ ++ A+G
Sbjct: 124 NLRFRKS-GSKMLAGHYLLGYLFYTHTFLALLLCGRRSYENTMSS--MQFVGLGIY-AIG 179

Query: 401 AVALHYWGGYQGEHQFQFVFAEKQVGLAVGALCVINGAIYL 523
           ++    W     EH        + + L  G    I G  YL
Sbjct: 180 SI----WQNASHEHLIAQKNHSQYLVLKKGCFKWITGPHYL 216


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -2

Query: 333 SVVPNKNVTICTSV*MR*PTITPEATISASGFFSSFRFQVPPTPRNS 193
           S+VP+KN T  +S  M    +TP +  S S  +S +R   PP P++S
Sbjct: 671 SLVPSKNNTASSSSLMLDSPVTPSSPYSTSQGYSFYR---PPKPKSS 714


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 109 DYSDYSREDIQNCLEHYNLSALP 177
           DY+ Y R   Q  LEH+  SALP
Sbjct: 274 DYNPYRRPTAQQALEHHYFSALP 296


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 374  GVFLWIAVGAVALHYWGGYQGEHQFQFVFAEKQVGLAVGALCVINGAIYLLDTALS 541
            G  L + + A     +G ++G HQ   V   +    + G  C+I G  Y+L  + S
Sbjct: 915  GAVLVVDILATLFCIFGWFKGGHQTSIVAVIRIWMYSFGIFCLIAGVYYILSESSS 970


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +2

Query: 284 LIYTLVQIVTFLFGTTEHKRALSEIVMNFVGVFLWIAVGAVALHYWGGY 430
           ++Y L++    +F    H  +L    + ++G+ + + +GA  + Y+ GY
Sbjct: 343 ILYLLLEAYPIIFAEKRHF-SLGVDALPYIGLLVGVILGAALIAYFQGY 390


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 97  GFRSDYSDYSREDIQNCLEHYNLSALPHRLQWRV 198
           GFR + SD   E I   L +Y+ S+LP    W V
Sbjct: 320 GFRGE-SDLDDEYIYESLVNYSRSSLPSAENWNV 352


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 374 GVFLWIAVGAVALHYWGGYQGEHQFQFVFAEKQVGLAVGALCVINGAIYLL 526
           G  L + + A     +G ++G HQ   V   +    + G  C++ G  Y+L
Sbjct: 827 GAVLAVDILATMFCIFGWFKGGHQTSIVAVLRIWMYSFGIFCIMAGTYYIL 877


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,198
Number of Sequences: 5004
Number of extensions: 65082
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)