Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e12
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    30   1.6  
Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 482 PGQPVSQRRQT-GTGARPGILPSSVMPQRPPQSIGTLRRSSSRS 354
           P QP  QRR+T  +G R G  P   MPQ+ P+ +   RR+S  S
Sbjct: 837 PPQPPQQRRRTESSGYRGGPPPPPPMPQQQPREMS--RRNSVAS 878


>Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical
           protein T01G5.4 protein.
          Length = 415

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/50 (20%), Positives = 25/50 (50%)
 Frame = +2

Query: 272 IVGYLIYTLVQIVTFLFGTTEHKRALSEIVMNFVGVFLWIAVGAVALHYW 421
           ++ +++Y  V+  T  FG TE  + +  + +     ++W  +  V L ++
Sbjct: 172 MMSWILYNYVENATIYFGATEESKVIYRVALIISNFYIWF-ISTVCLAFF 220


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 482 PGQPVSQRRQTGTGARP-GILPSSVMPQRPPQSIG 381
           PG P  Q  Q GTGA P G+ P     Q PP   G
Sbjct: 121 PGYPQQQPYQIGTGATPAGMYPPPPTGQYPPPPPG 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,480,646
Number of Sequences: 27780
Number of extensions: 370382
Number of successful extensions: 1033
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)